XTandemInfile
- class pyopenms.XTandemInfile
Bases:
objectCython implementation of _XTandemInfile
Documentation is available at http://www.openms.de/current_doxygen/html/classOpenMS_1_1XTandemInfile.html
- __init__()
Cython signature: void XTandemInfile()
Methods
Cython signature: void XTandemInfile()
Cython signature: String getCleavageSite()
Cython signature: String getDefaultParametersFilename()
Cython signature: ErrorUnit getFragmentMassErrorUnit()
Cython signature: double getFragmentMassTolerance()
Cython signature: String getInputFilename()
Cython signature: int getMaxPrecursorCharge()
Cython signature: double getMaxValidEValue()
Cython signature: ModificationDefinitionsSet getModifications()
Cython signature: unsigned int getNumberOfMissedCleavages()
Cython signature: unsigned int getNumberOfThreads()
Cython signature: String getOutputFilename()
Cython signature: String getOutputResults()
Cython signature: MassType getPrecursorErrorType()
Cython signature: ErrorUnit getPrecursorMassErrorUnit()
Cython signature: double getPrecursorMassToleranceMinus()
Cython signature: double getPrecursorMassTolerancePlus()
Cython signature: String getTaxon()
Cython signature: String getTaxonomyFilename()
Cython signature: void setAllowIsotopeError(bool allow_isotope_error)
Cython signature: void setCleavageSite(String cleavage_site)
Cython signature: void setDefaultParametersFilename(const String & filename)
Cython signature: void setFragmentMassErrorUnit(ErrorUnit unit)
Cython signature: void setFragmentMassTolerance(double tolerance)
Cython signature: void setInputFilename(const String & input_file)
Cython signature: void setMaxPrecursorCharge(int max_charge)
Cython signature: void setMaxValidEValue(double value)
Cython signature: void setModifications(ModificationDefinitionsSet & mods)
Cython signature: void setNumberOfMissedCleavages(unsigned int missed_cleavages)
Cython signature: void setNumberOfThreads(unsigned int threads)
Cython signature: void setOutputFilename(const String & output)
Cython signature: void setOutputResults(String result)
Cython signature: void setPrecursorErrorType(MassType mono_isotopic)
Cython signature: void setPrecursorMassErrorUnit(ErrorUnit unit)
Cython signature: void setPrecursorMassToleranceMinus(double tol)
Cython signature: void setPrecursorMassTolerancePlus(double tol)
Cython signature: void setSemiCleavage(bool semi_cleavage)
Cython signature: void setTaxon(const String & taxon)
Cython signature: void setTaxonomyFilename(const String & filename)
Cython signature: void write(String filename, bool ignore_member_parameters, bool force_default_mods)
- ErrorUnit
alias of
pyopenms.pyopenms_3.__ErrorUnit
- MassType
alias of
pyopenms.pyopenms_3.__MassType
- getCleavageSite()
Cython signature: String getCleavageSite()
- getDefaultParametersFilename()
Cython signature: String getDefaultParametersFilename()
- getFragmentMassErrorUnit()
Cython signature: ErrorUnit getFragmentMassErrorUnit()
- getFragmentMassTolerance()
Cython signature: double getFragmentMassTolerance()
- getInputFilename()
Cython signature: String getInputFilename()
- getMaxPrecursorCharge()
Cython signature: int getMaxPrecursorCharge()
- getMaxValidEValue()
Cython signature: double getMaxValidEValue()
- getModifications()
Cython signature: ModificationDefinitionsSet getModifications()
- getNumberOfMissedCleavages()
Cython signature: unsigned int getNumberOfMissedCleavages()
- getNumberOfThreads()
Cython signature: unsigned int getNumberOfThreads()
- getOutputFilename()
Cython signature: String getOutputFilename()
- getOutputResults()
Cython signature: String getOutputResults()
- getPrecursorErrorType()
Cython signature: MassType getPrecursorErrorType()
- getPrecursorMassErrorUnit()
Cython signature: ErrorUnit getPrecursorMassErrorUnit()
- getPrecursorMassToleranceMinus()
Cython signature: double getPrecursorMassToleranceMinus()
- getPrecursorMassTolerancePlus()
Cython signature: double getPrecursorMassTolerancePlus()
- getTaxon()
Cython signature: String getTaxon()
- getTaxonomyFilename()
Cython signature: String getTaxonomyFilename()
- setAllowIsotopeError()
Cython signature: void setAllowIsotopeError(bool allow_isotope_error)
- setCleavageSite()
Cython signature: void setCleavageSite(String cleavage_site)
- setDefaultParametersFilename()
Cython signature: void setDefaultParametersFilename(const String & filename)
- setFragmentMassErrorUnit()
Cython signature: void setFragmentMassErrorUnit(ErrorUnit unit)
- setFragmentMassTolerance()
Cython signature: void setFragmentMassTolerance(double tolerance)
- setInputFilename()
Cython signature: void setInputFilename(const String & input_file)
- setMaxPrecursorCharge()
Cython signature: void setMaxPrecursorCharge(int max_charge)
- setMaxValidEValue()
Cython signature: void setMaxValidEValue(double value)
- setModifications()
Cython signature: void setModifications(ModificationDefinitionsSet & mods)
- setNumberOfMissedCleavages()
Cython signature: void setNumberOfMissedCleavages(unsigned int missed_cleavages)
- setNumberOfThreads()
Cython signature: void setNumberOfThreads(unsigned int threads)
- setOutputFilename()
Cython signature: void setOutputFilename(const String & output)
- setOutputResults()
Cython signature: void setOutputResults(String result)
- setPrecursorErrorType()
Cython signature: void setPrecursorErrorType(MassType mono_isotopic)
- setPrecursorMassErrorUnit()
Cython signature: void setPrecursorMassErrorUnit(ErrorUnit unit)
- setPrecursorMassToleranceMinus()
Cython signature: void setPrecursorMassToleranceMinus(double tol)
- setPrecursorMassTolerancePlus()
Cython signature: void setPrecursorMassTolerancePlus(double tol)
- setSemiCleavage()
Cython signature: void setSemiCleavage(bool semi_cleavage)
- setTaxon()
Cython signature: void setTaxon(const String & taxon)
- setTaxonomyFilename()
Cython signature: void setTaxonomyFilename(const String & filename)
- write()
Cython signature: void write(String filename, bool ignore_member_parameters, bool force_default_mods)