Protein

class pyopenms.Protein

Bases: object

Cython implementation of _Protein

Documentation is available at http://www.openms.de/current_doxygen/html/classOpenMS::TargetedExperimentHelper::RetentionTime::RTUnit_1_1Protein.html: – Inherits from [‘CVTermList’]

__init__()

Cython signature: void Protein()
Cython signature: void Protein(Protein &)

Methods

`__init__`	Cython signature: void Protein()
`addCVTerm`	Cython signature: void addCVTerm(CVTerm & term) Adds a CV term
`clearMetaInfo`	Cython signature: void clearMetaInfo() Removes all meta values
`consumeCVTerms`	Cython signature: void consumeCVTerms(libcpp_map[String,libcpp_vector[CVTerm]] cv_term_map) Merges the given map into the member map, no duplicate checking
`empty`	Cython signature: bool empty()
`getCVTerms`	Cython signature: libcpp_map[String,libcpp_vector[CVTerm]] getCVTerms() Returns the accession string of the term
`getKeys`	Cython signature: void getKeys(libcpp_vector[String] & keys) Fills the given vector with a list of all keys for which a value is set
`getMetaValue`	Cython signature: DataValue getMetaValue(String) Returns the value corresponding to a string, or
`hasCVTerm`	Cython signature: bool hasCVTerm(String accession)
`isMetaEmpty`	Cython signature: bool isMetaEmpty() Returns if the MetaInfo is empty
`metaRegistry`	Cython signature: MetaInfoRegistry metaRegistry() Returns a reference to the MetaInfoRegistry
`metaValueExists`	Cython signature: bool metaValueExists(String) Returns whether an entry with the given name exists
`removeMetaValue`	Cython signature: void removeMetaValue(String) Removes the DataValue corresponding to name if it exists
`replaceCVTerm`	Cython signature: void replaceCVTerm(CVTerm & term) Replaces the specified CV term
`replaceCVTerms`	Cython signature: void replaceCVTerms(libcpp_vector[CVTerm] cv_terms, String accession)
`setCVTerms`	Cython signature: void setCVTerms(libcpp_vector[CVTerm] & terms) Sets the CV terms
`setMetaValue`	Cython signature: void setMetaValue(String, DataValue) Sets the DataValue corresponding to a name

Attributes

`id`
`sequence`

addCVTerm(): Cython signature: void addCVTerm(CVTerm & term) Adds a CV term

clearMetaInfo(): Cython signature: void clearMetaInfo() Removes all meta values

consumeCVTerms(): Cython signature: void consumeCVTerms(libcpp_map[String,libcpp_vector[CVTerm]] cv_term_map) Merges the given map into the member map, no duplicate checking

empty(): Cython signature: bool empty()

getCVTerms(): Cython signature: libcpp_map[String,libcpp_vector[CVTerm]] getCVTerms() Returns the accession string of the term

getKeys(): Cython signature: void getKeys(libcpp_vector[String] & keys) Fills the given vector with a list of all keys for which a value is set

getMetaValue(): Cython signature: DataValue getMetaValue(String) Returns the value corresponding to a string, or

hasCVTerm(): Cython signature: bool hasCVTerm(String accession)

id

isMetaEmpty(): Cython signature: bool isMetaEmpty() Returns if the MetaInfo is empty

metaRegistry(): Cython signature: MetaInfoRegistry metaRegistry() Returns a reference to the MetaInfoRegistry

metaValueExists(): Cython signature: bool metaValueExists(String) Returns whether an entry with the given name exists

removeMetaValue(): Cython signature: void removeMetaValue(String) Removes the DataValue corresponding to name if it exists

replaceCVTerm(): Cython signature: void replaceCVTerm(CVTerm & term) Replaces the specified CV term

replaceCVTerms(): Cython signature: void replaceCVTerms(libcpp_vector[CVTerm] cv_terms, String accession)

sequence

setCVTerms(): Cython signature: void setCVTerms(libcpp_vector[CVTerm] & terms) Sets the CV terms

setMetaValue(): Cython signature: void setMetaValue(String, DataValue) Sets the DataValue corresponding to a name