OMSSAXMLFile

class pyopenms.OMSSAXMLFile

Bases: object

Cython implementation of _OMSSAXMLFile

Documentation is available at http://www.openms.de/current_doxygen/html/classOpenMS_1_1OMSSAXMLFile.html

– Inherits from [‘XMLFile’]

__init__()

Cython signature: void OMSSAXMLFile()

Methods

__init__

Cython signature: void OMSSAXMLFile()

getVersion

Cython signature: String getVersion() Return the version of the schema

load

Cython signature: void load(const String & filename, ProteinIdentification & protein_identification, libcpp_vector[PeptideIdentification] & id_data, bool load_proteins, bool load_empty_hits)

setModificationDefinitionsSet

Cython signature: void setModificationDefinitionsSet(ModificationDefinitionsSet rhs) Sets the valid modifications
getVersion()

Cython signature: String getVersion() Return the version of the schema

load()

Cython signature: void load(const String & filename, ProteinIdentification & protein_identification, libcpp_vector[PeptideIdentification] & id_data, bool load_proteins, bool load_empty_hits)

Parameters

  • filename – The file to be loaded

  • protein_identification – Protein identifications belonging to the whole experiment

  • id_data – The identifications with m/z and RT

  • load_proteins – If this flag is set to false, the protein identifications are not loaded

  • load_empty_hits – Many spectra will not return a hit. Report empty peptide identifications?

setModificationDefinitionsSet()

Cython signature: void setModificationDefinitionsSet(ModificationDefinitionsSet rhs) Sets the valid modifications