TargetedSpectraExtractor

class pyopenms.TargetedSpectraExtractor

Bases: object

Cython implementation of _TargetedSpectraExtractor

Documentation is available at http://www.openms.de/current_doxygen/html/classOpenMS_1_1TargetedSpectraExtractor.html

– Inherits from [‘DefaultParamHandler’]

__init__()

  • Cython signature: void TargetedSpectraExtractor()

  • Cython signature: void TargetedSpectraExtractor(TargetedSpectraExtractor &)

Methods

__init__

  • Cython signature: void TargetedSpectraExtractor()

annotateSpectra

  • Cython signature: void annotateSpectra(libcpp_vector[MSSpectrum] &, TargetedExperiment &, libcpp_vector[MSSpectrum] &, FeatureMap &)

constructTransitionsList

Cython signature: void constructTransitionsList(FeatureMap &, FeatureMap &, TargetedExperiment &)

extractSpectra

  • Cython signature: void extractSpectra(MSExperiment &, TargetedExperiment &, libcpp_vector[MSSpectrum] &, FeatureMap &, bool)

getDefaultParameters

Cython signature: void getDefaultParameters(Param &)

getDefaults

Cython signature: Param getDefaults() Returns the default parameters

getName

Cython signature: String getName() Returns the name

getParameters

Cython signature: Param getParameters() Returns the parameters

getSubsections

Cython signature: libcpp_vector[String] getSubsections()

mergeFeatures

Cython signature: void mergeFeatures(FeatureMap &, FeatureMap &)

pickSpectrum

Cython signature: void pickSpectrum(MSSpectrum &, MSSpectrum &)

scoreSpectra

  • Cython signature: void scoreSpectra(libcpp_vector[MSSpectrum] &, libcpp_vector[MSSpectrum] &, FeatureMap &, libcpp_vector[MSSpectrum] &)

searchSpectrum

Cython signature: void searchSpectrum(FeatureMap &, FeatureMap &, bool)

selectSpectra

  • Cython signature: void selectSpectra(libcpp_vector[MSSpectrum] &, FeatureMap &, libcpp_vector[MSSpectrum] &, FeatureMap &)

setName

Cython signature: void setName(const String &) Sets the name

setParameters

Cython signature: void setParameters(Param & param) Sets the parameters

storeSpectraMSP

Cython signature: void storeSpectraMSP(const String &, MSExperiment &)
annotateSpectra()

  • Cython signature: void annotateSpectra(libcpp_vector[MSSpectrum] &, TargetedExperiment &, libcpp_vector[MSSpectrum] &, FeatureMap &)

  • Cython signature: void annotateSpectra(libcpp_vector[MSSpectrum] &, TargetedExperiment &, libcpp_vector[MSSpectrum] &)

  • Cython signature: void annotateSpectra(libcpp_vector[MSSpectrum] &, FeatureMap &, FeatureMap &, libcpp_vector[MSSpectrum] &)

constructTransitionsList()

Cython signature: void constructTransitionsList(FeatureMap &, FeatureMap &, TargetedExperiment &)

extractSpectra()

  • Cython signature: void extractSpectra(MSExperiment &, TargetedExperiment &, libcpp_vector[MSSpectrum] &, FeatureMap &, bool)

  • Cython signature: void extractSpectra(MSExperiment &, TargetedExperiment &, libcpp_vector[MSSpectrum] &)

  • Cython signature: void extractSpectra(MSExperiment &, FeatureMap &, libcpp_vector[MSSpectrum] &)

getDefaultParameters()

Cython signature: void getDefaultParameters(Param &)

getDefaults()

Cython signature: Param getDefaults() Returns the default parameters

getName()

Cython signature: String getName() Returns the name

getParameters()

Cython signature: Param getParameters() Returns the parameters

getSubsections()

Cython signature: libcpp_vector[String] getSubsections()

mergeFeatures()

Cython signature: void mergeFeatures(FeatureMap &, FeatureMap &)

pickSpectrum()

Cython signature: void pickSpectrum(MSSpectrum &, MSSpectrum &)

scoreSpectra()

  • Cython signature: void scoreSpectra(libcpp_vector[MSSpectrum] &, libcpp_vector[MSSpectrum] &, FeatureMap &, libcpp_vector[MSSpectrum] &)

  • Cython signature: void scoreSpectra(libcpp_vector[MSSpectrum] &, libcpp_vector[MSSpectrum] &, libcpp_vector[MSSpectrum] &)

searchSpectrum()

Cython signature: void searchSpectrum(FeatureMap &, FeatureMap &, bool)

selectSpectra()

  • Cython signature: void selectSpectra(libcpp_vector[MSSpectrum] &, FeatureMap &, libcpp_vector[MSSpectrum] &, FeatureMap &)

  • Cython signature: void selectSpectra(libcpp_vector[MSSpectrum] &, libcpp_vector[MSSpectrum] &)

setName()

Cython signature: void setName(const String &) Sets the name

setParameters()

Cython signature: void setParameters(Param & param) Sets the parameters

storeSpectraMSP()

Cython signature: void storeSpectraMSP(const String &, MSExperiment &)