PSProteinInference

class pyopenms.PSProteinInference

Bases: object

Cython implementation of _PSProteinInference

Documentation is available at http://www.openms.de/current_doxygen/html/classOpenMS_1_1PSProteinInference.html

__init__()

• Cython signature: void PSProteinInference()

• Cython signature: void PSProteinInference(PSProteinInference &)

Methods

__init__	Cython signature: void PSProteinInference()
calculateProteinProbabilities	Cython signature: void calculateProteinProbabilities(libcpp_vector[PeptideIdentification] & ids)
findMinimalProteinList	Cython signature: size_t findMinimalProteinList(libcpp_vector[PeptideIdentification] & peptide_ids)
getNumberOfProtIds	Cython signature: int getNumberOfProtIds(double protein_id_threshold)
getProteinProbability	Cython signature: double getProteinProbability(const String & acc)
getSolver	Cython signature: SOLVER getSolver()
isProteinInMinimalList	Cython signature: bool isProteinInMinimalList(const String & acc)

calculateProteinProbabilities()

Cython signature: void calculateProteinProbabilities(libcpp_vector[PeptideIdentification] & ids)

findMinimalProteinList()

Cython signature: size_t findMinimalProteinList(libcpp_vector[PeptideIdentification] & peptide_ids)

getNumberOfProtIds()

Cython signature: int getNumberOfProtIds(double protein_id_threshold)

getProteinProbability()

Cython signature: double getProteinProbability(const String & acc)

getSolver()

Cython signature: SOLVER getSolver()

isProteinInMinimalList()

Cython signature: bool isProteinInMinimalList(const String & acc)