ProteinHit

class pyopenms.ProteinHit

Bases: object

Cython implementation of _ProteinHit

Documentation is available at http://www.openms.de/current_doxygen/html/classOpenMS_1_1ProteinHit.html: – Inherits from [‘MetaInfoInterface’]

__init__()

Cython signature: void ProteinHit()
Cython signature: void ProteinHit(double score, unsigned int rank, String accession, String sequence)
Cython signature: void ProteinHit(ProteinHit &)

Methods

`__init__`	Cython signature: void ProteinHit()
`clearMetaInfo`	Cython signature: void clearMetaInfo() Removes all meta values
`getAccession`	Cython signature: String getAccession() Returns the accession of the protein
`getCoverage`	Cython signature: double getCoverage() Returns the coverage (in percent) of the protein hit based upon matched peptides
`getDescription`	Cython signature: String getDescription() Returns the description of the protein
`getKeys`	Cython signature: void getKeys(libcpp_vector[String] & keys) Fills the given vector with a list of all keys for which a value is set
`getMetaValue`	Cython signature: DataValue getMetaValue(String) Returns the value corresponding to a string, or
`getRank`	Cython signature: unsigned int getRank() Returns the rank of the protein hit
`getScore`	Cython signature: float getScore() Returns the score of the protein hit
`getSequence`	Cython signature: String getSequence() Returns the protein sequence
`isMetaEmpty`	Cython signature: bool isMetaEmpty() Returns if the MetaInfo is empty
`metaRegistry`	Cython signature: MetaInfoRegistry metaRegistry() Returns a reference to the MetaInfoRegistry
`metaValueExists`	Cython signature: bool metaValueExists(String) Returns whether an entry with the given name exists
`removeMetaValue`	Cython signature: void removeMetaValue(String) Removes the DataValue corresponding to name if it exists
`setAccession`	Cython signature: void setAccession(String) Sets the accession of the protein
`setCoverage`	Cython signature: void setCoverage(double) Sets the coverage (in percent) of the protein hit based upon matched peptides
`setDescription`	Cython signature: void setDescription(String description) Sets the description of the protein
`setMetaValue`	Cython signature: void setMetaValue(String, DataValue) Sets the DataValue corresponding to a name
`setRank`	Cython signature: void setRank(unsigned int) Sets the rank
`setScore`	Cython signature: void setScore(float) Sets the score of the protein hit
`setSequence`	Cython signature: void setSequence(String) Sets the protein sequence

clearMetaInfo(): Cython signature: void clearMetaInfo() Removes all meta values

getAccession(): Cython signature: String getAccession() Returns the accession of the protein

getCoverage(): Cython signature: double getCoverage() Returns the coverage (in percent) of the protein hit based upon matched peptides

getDescription(): Cython signature: String getDescription() Returns the description of the protein

getKeys(): Cython signature: void getKeys(libcpp_vector[String] & keys) Fills the given vector with a list of all keys for which a value is set

getMetaValue(): Cython signature: DataValue getMetaValue(String) Returns the value corresponding to a string, or

getRank(): Cython signature: unsigned int getRank() Returns the rank of the protein hit

getScore(): Cython signature: float getScore() Returns the score of the protein hit

getSequence(): Cython signature: String getSequence() Returns the protein sequence

isMetaEmpty(): Cython signature: bool isMetaEmpty() Returns if the MetaInfo is empty

metaRegistry(): Cython signature: MetaInfoRegistry metaRegistry() Returns a reference to the MetaInfoRegistry

metaValueExists(): Cython signature: bool metaValueExists(String) Returns whether an entry with the given name exists

removeMetaValue(): Cython signature: void removeMetaValue(String) Removes the DataValue corresponding to name if it exists

setAccession(): Cython signature: void setAccession(String) Sets the accession of the protein

setCoverage(): Cython signature: void setCoverage(double) Sets the coverage (in percent) of the protein hit based upon matched peptides

setDescription(): Cython signature: void setDescription(String description) Sets the description of the protein

setMetaValue(): Cython signature: void setMetaValue(String, DataValue) Sets the DataValue corresponding to a name

setRank(): Cython signature: void setRank(unsigned int) Sets the rank

setScore(): Cython signature: void setScore(float) Sets the score of the protein hit

setSequence(): Cython signature: void setSequence(String) Sets the protein sequence