PeptideIdentification

class pyopenms.PeptideIdentification

Bases: object

Cython implementation of _PeptideIdentification

Documentation is available at http://www.openms.de/current_doxygen/html/classOpenMS_1_1PeptideIdentification.html: – Inherits from [‘MetaInfoInterface’]

__init__()

Cython signature: void PeptideIdentification()
Cython signature: void PeptideIdentification(PeptideIdentification &)

Methods

`__init__`	Cython signature: void PeptideIdentification()
`assignRanks`	Cython signature: void assignRanks()
`clearMetaInfo`	Cython signature: void clearMetaInfo() Removes all meta values
`empty`	Cython signature: bool empty()
`getBaseName`	Cython signature: String getBaseName()
`getExperimentLabel`	Cython signature: String getExperimentLabel()
`getHits`	Cython signature: libcpp_vector[PeptideHit] getHits() Returns the peptide hits as const
`getIdentifier`	Cython signature: String getIdentifier()
`getKeys`	Cython signature: void getKeys(libcpp_vector[String] & keys) Fills the given vector with a list of all keys for which a value is set
`getMZ`	Cython signature: double getMZ()
`getMetaValue`	Cython signature: DataValue getMetaValue(String) Returns the value corresponding to a string, or
`getRT`	Cython signature: double getRT()
`getReferencingHits`	Cython signature: libcpp_vector[PeptideHit] getReferencingHits(libcpp_vector[PeptideHit], libcpp_set[String] &) Returns all peptide hits which reference to a given protein accession (i.e.
`getScoreType`	Cython signature: String getScoreType()
`getSignificanceThreshold`	Cython signature: double getSignificanceThreshold() Returns the peptide significance threshold value
`hasMZ`	Cython signature: bool hasMZ()
`hasRT`	Cython signature: bool hasRT()
`insertHit`	Cython signature: void insertHit(PeptideHit) Appends a peptide hit
`isHigherScoreBetter`	Cython signature: bool isHigherScoreBetter()
`isMetaEmpty`	Cython signature: bool isMetaEmpty() Returns if the MetaInfo is empty
`metaRegistry`	Cython signature: MetaInfoRegistry metaRegistry() Returns a reference to the MetaInfoRegistry
`metaValueExists`	Cython signature: bool metaValueExists(String) Returns whether an entry with the given name exists
`removeMetaValue`	Cython signature: void removeMetaValue(String) Removes the DataValue corresponding to name if it exists
`setBaseName`	Cython signature: void setBaseName(String)
`setExperimentLabel`	Cython signature: void setExperimentLabel(String)
`setHigherScoreBetter`	Cython signature: void setHigherScoreBetter(bool)
`setHits`	Cython signature: void setHits(libcpp_vector[PeptideHit]) Sets the peptide hits
`setIdentifier`	Cython signature: void setIdentifier(String)
`setMZ`	Cython signature: void setMZ(double)
`setMetaValue`	Cython signature: void setMetaValue(String, DataValue) Sets the DataValue corresponding to a name
`setRT`	Cython signature: void setRT(double)
`setScoreType`	Cython signature: void setScoreType(String)
`setSignificanceThreshold`	Cython signature: void setSignificanceThreshold(double value) Setting of the peptide significance threshold value
`sort`	Cython signature: void sort()
`sortByRank`	Cython signature: void sortByRank()

assignRanks(): Cython signature: void assignRanks()

clearMetaInfo(): Cython signature: void clearMetaInfo() Removes all meta values

empty(): Cython signature: bool empty()

getBaseName(): Cython signature: String getBaseName()

getExperimentLabel(): Cython signature: String getExperimentLabel()

getHits(): Cython signature: libcpp_vector[PeptideHit] getHits() Returns the peptide hits as const

getIdentifier(): Cython signature: String getIdentifier()

getKeys(): Cython signature: void getKeys(libcpp_vector[String] & keys) Fills the given vector with a list of all keys for which a value is set

getMZ(): Cython signature: double getMZ()

getMetaValue(): Cython signature: DataValue getMetaValue(String) Returns the value corresponding to a string, or

getRT(): Cython signature: double getRT()

getReferencingHits(): Cython signature: libcpp_vector[PeptideHit] getReferencingHits(libcpp_vector[PeptideHit], libcpp_set[String] &) Returns all peptide hits which reference to a given protein accession (i.e. filter by protein accession)

getScoreType(): Cython signature: String getScoreType()

getSignificanceThreshold(): Cython signature: double getSignificanceThreshold() Returns the peptide significance threshold value

hasMZ(): Cython signature: bool hasMZ()

hasRT(): Cython signature: bool hasRT()

insertHit(): Cython signature: void insertHit(PeptideHit) Appends a peptide hit

isHigherScoreBetter(): Cython signature: bool isHigherScoreBetter()

isMetaEmpty(): Cython signature: bool isMetaEmpty() Returns if the MetaInfo is empty

metaRegistry(): Cython signature: MetaInfoRegistry metaRegistry() Returns a reference to the MetaInfoRegistry

metaValueExists(): Cython signature: bool metaValueExists(String) Returns whether an entry with the given name exists

removeMetaValue(): Cython signature: void removeMetaValue(String) Removes the DataValue corresponding to name if it exists

setBaseName(): Cython signature: void setBaseName(String)

setExperimentLabel(): Cython signature: void setExperimentLabel(String)

setHigherScoreBetter(): Cython signature: void setHigherScoreBetter(bool)

setHits(): Cython signature: void setHits(libcpp_vector[PeptideHit]) Sets the peptide hits

setIdentifier(): Cython signature: void setIdentifier(String)

setMZ(): Cython signature: void setMZ(double)

setMetaValue(): Cython signature: void setMetaValue(String, DataValue) Sets the DataValue corresponding to a name

setRT(): Cython signature: void setRT(double)

setScoreType(): Cython signature: void setScoreType(String)

setSignificanceThreshold(): Cython signature: void setSignificanceThreshold(double value) Setting of the peptide significance threshold value

sort(): Cython signature: void sort()

sortByRank(): Cython signature: void sortByRank()