FeatureGroupingAlgorithmKD

class pyopenms.FeatureGroupingAlgorithmKD

Bases: object

Cython implementation of _FeatureGroupingAlgorithmKD

Documentation is available at http://www.openms.de/current_doxygen/html/classOpenMS_1_1FeatureGroupingAlgorithmKD.html: – Inherits from [‘FeatureGroupingAlgorithm’, ‘ProgressLogger’]

__init__(): Cython signature: void FeatureGroupingAlgorithmKD() A feature grouping algorithm for unlabeled data

Methods

`__init__`	Cython signature: void FeatureGroupingAlgorithmKD() A feature grouping algorithm for unlabeled data
`endProgress`	Cython signature: void endProgress() Ends the progress display
`getDefaults`	Cython signature: Param getDefaults() Returns the default parameters
`getLogType`	Cython signature: LogType getLogType() Returns the type of progress log being used
`getName`	Cython signature: String getName() Returns the name
`getParameters`	Cython signature: Param getParameters() Returns the parameters
`getProductName`	Cython signature: String getProductName() Returns the product name (for the Factory)
`getSubsections`	Cython signature: libcpp_vector[String] getSubsections()
`group`	Cython signature: void group(libcpp_vector[FeatureMap] & maps, ConsensusMap & out)
`nextProgress`	Cython signature: void nextProgress() Increment progress by 1 (according to range begin-end)
`registerChildren`	Cython signature: void registerChildren() Register all derived classes in this method
`setLogType`	Cython signature: void setLogType(LogType) Sets the progress log that should be used.
`setName`	Cython signature: void setName(const String &) Sets the name
`setParameters`	Cython signature: void setParameters(Param & param) Sets the parameters
`setProgress`	Cython signature: void setProgress(ptrdiff_t value) Sets the current progress
`startProgress`	Cython signature: void startProgress(ptrdiff_t begin, ptrdiff_t end, String label)
`transferSubelements`	Cython signature: void transferSubelements(libcpp_vector[ConsensusMap] maps, ConsensusMap & out) Transfers subelements (grouped features) from input consensus maps to the result consensus map

endProgress(): Cython signature: void endProgress() Ends the progress display

getDefaults(): Cython signature: Param getDefaults() Returns the default parameters

getLogType(): Cython signature: LogType getLogType() Returns the type of progress log being used

getName(): Cython signature: String getName() Returns the name

getParameters(): Cython signature: Param getParameters() Returns the parameters

getProductName(): Cython signature: String getProductName() Returns the product name (for the Factory)

getSubsections(): Cython signature: libcpp_vector[String] getSubsections()

group()

Cython signature: void group(libcpp_vector[FeatureMap] & maps, ConsensusMap & out)
Cython signature: void group(libcpp_vector[ConsensusMap] & maps, ConsensusMap & out)

nextProgress(): Cython signature: void nextProgress() Increment progress by 1 (according to range begin-end)

registerChildren(): Cython signature: void registerChildren() Register all derived classes in this method

setLogType(): Cython signature: void setLogType(LogType) Sets the progress log that should be used. The default type is NONE!

setName(): Cython signature: void setName(const String &) Sets the name

setParameters(): Cython signature: void setParameters(Param & param) Sets the parameters

setProgress(): Cython signature: void setProgress(ptrdiff_t value) Sets the current progress

startProgress(): Cython signature: void startProgress(ptrdiff_t begin, ptrdiff_t end, String label)

transferSubelements(): Cython signature: void transferSubelements(libcpp_vector[ConsensusMap] maps, ConsensusMap & out) Transfers subelements (grouped features) from input consensus maps to the result consensus map