ResidueDB

class pyopenms.ResidueDB

Bases: object

Cython implementation of _ResidueDB

Documentation is available at http://www.openms.de/current_doxygen/html/classOpenMS_1_1ResidueDB.html

__init__(*args, **kwargs)

Methods

__init__(*args, **kwargs)

getModifiedResidue

  • Cython signature: const Residue * getModifiedResidue(const String & name)

getNumberOfModifiedResidues

Cython signature: size_t getNumberOfModifiedResidues() Returns the number of modified residues stored

getNumberOfResidues

Cython signature: size_t getNumberOfResidues() Returns the number of residues stored

getResidue

Cython signature: const Residue * getResidue(const String & name) Returns a pointer to the residue with name, 3 letter code or 1 letter code name

getResidueSets

Cython signature: libcpp_set[String] getResidueSets() Returns all residue sets that are registered which this instance

getResidues

Cython signature: libcpp_set[const Residue *] getResidues(const String & residue_set) Returns a set of all residues stored in this residue db

hasResidue

Cython signature: bool hasResidue(const String & name) Returns true if the db contains a residue with the given name
getModifiedResidue()

  • Cython signature: const Residue * getModifiedResidue(const String & name) Returns a pointer to a modified residue given a modification name

  • Cython signature: const Residue * getModifiedResidue(Residue * residue, const String & name) Returns a pointer to a modified residue given a residue and a modification name

getNumberOfModifiedResidues()

Cython signature: size_t getNumberOfModifiedResidues() Returns the number of modified residues stored

getNumberOfResidues()

Cython signature: size_t getNumberOfResidues() Returns the number of residues stored

getResidue()

Cython signature: const Residue * getResidue(const String & name) Returns a pointer to the residue with name, 3 letter code or 1 letter code name

getResidueSets()

Cython signature: libcpp_set[String] getResidueSets() Returns all residue sets that are registered which this instance

getResidues()

Cython signature: libcpp_set[const Residue *] getResidues(const String & residue_set) Returns a set of all residues stored in this residue db

hasResidue()

Cython signature: bool hasResidue(const String & name) Returns true if the db contains a residue with the given name