InclusionExclusionList

class pyopenms.InclusionExclusionList

Bases: object

Cython implementation of _InclusionExclusionList

Documentation is available at http://www.openms.de/current_doxygen/html/classOpenMS_1_1InclusionExclusionList.html

– Inherits from [‘DefaultParamHandler’]

__init__()

  • Cython signature: void InclusionExclusionList() Provides functionality for writing inclusion or exclusion lists

  • Cython signature: void InclusionExclusionList(InclusionExclusionList &)

Methods

__init__

  • Cython signature: void InclusionExclusionList()

getDefaults

Cython signature: Param getDefaults() Returns the default parameters

getName

Cython signature: String getName() Returns the name

getParameters

Cython signature: Param getParameters() Returns the parameters

getSubsections

Cython signature: libcpp_vector[String] getSubsections()

setName

Cython signature: void setName(const String &) Sets the name

setParameters

Cython signature: void setParameters(Param & param) Sets the parameters

writeTargets

  • Cython signature: void writeTargets(libcpp_vector[FASTAEntry] & fasta_entries, const String & out_path, IntList & charges, const String rt_model_path)
getDefaults()

Cython signature: Param getDefaults() Returns the default parameters

getName()

Cython signature: String getName() Returns the name

getParameters()

Cython signature: Param getParameters() Returns the parameters

getSubsections()

Cython signature: libcpp_vector[String] getSubsections()

setName()

Cython signature: void setName(const String &) Sets the name

setParameters()

Cython signature: void setParameters(Param & param) Sets the parameters

writeTargets()

  • Cython signature: void writeTargets(libcpp_vector[FASTAEntry] & fasta_entries, const String & out_path, IntList & charges, const String rt_model_path) Writes inclusion or exclusion list of tryptic peptides of the given proteins (tab-delimited)

  • Cython signature: void writeTargets(FeatureMap & map_, const String & out_path) Writes inclusion or exclusion list of given feature map

  • Cython signature: void writeTargets(libcpp_vector[PeptideIdentification] & pep_ids, const String & out_path, IntList & charges) Writes inclusion or exclusion list of given peptide ids (tab-delimited)