PeakIntegrator

class pyopenms.PeakIntegrator

Bases: object

Cython implementation of _PeakIntegrator

Documentation is available at http://www.openms.de/current_doxygen/html/classOpenMS_1_1PeakIntegrator.html

– Inherits from [‘DefaultParamHandler’]

__init__()

• Cython signature: void PeakIntegrator()

• Cython signature: void PeakIntegrator(PeakIntegrator &)

Methods

__init__	Cython signature: void PeakIntegrator()
calculatePeakShapeMetrics	Cython signature: PI_PeakShapeMetrics calculatePeakShapeMetrics(MSChromatogram & chromatogram, double left, double right, double peak_height, double peak_apex_pos)
estimateBackground	Cython signature: PI_PeakBackground estimateBackground(MSChromatogram & chromatogram, double left, double right, double peak_apex_pos)
getDefaultParameters	Cython signature: void getDefaultParameters(Param)
getDefaults	Cython signature: Param getDefaults() Returns the default parameters
getName	Cython signature: String getName() Returns the name
getParameters	Cython signature: Param getParameters() Returns the parameters
getSubsections	Cython signature: libcpp_vector[String] getSubsections()
integratePeak	Cython signature: PI_PeakArea integratePeak(MSChromatogram & chromatogram, double left, double right)
setName	Cython signature: void setName(const String &) Sets the name
setParameters	Cython signature: void setParameters(Param & param) Sets the parameters

calculatePeakShapeMetrics()

• Cython signature: PI_PeakShapeMetrics calculatePeakShapeMetrics(MSChromatogram & chromatogram, double left, double right, double peak_height, double peak_apex_pos)

• Cython signature: PI_PeakShapeMetrics calculatePeakShapeMetrics(MSSpectrum & spectrum, double left, double right, double peak_height, double peak_apex_pos)

estimateBackground()

• Cython signature: PI_PeakBackground estimateBackground(MSChromatogram & chromatogram, double left, double right, double peak_apex_pos)

• Cython signature: PI_PeakBackground estimateBackground(MSSpectrum & spectrum, double left, double right, double peak_apex_pos)

getDefaultParameters()

Cython signature: void getDefaultParameters(Param)

getDefaults()

Cython signature: Param getDefaults() Returns the default parameters

getName()

Cython signature: String getName() Returns the name

getParameters()

Cython signature: Param getParameters() Returns the parameters

getSubsections()

Cython signature: libcpp_vector[String] getSubsections()

integratePeak()

• Cython signature: PI_PeakArea integratePeak(MSChromatogram & chromatogram, double left, double right)

• Cython signature: PI_PeakArea integratePeak(MSSpectrum & spectrum, double left, double right)

setName()

Cython signature: void setName(const String &) Sets the name

setParameters()

Cython signature: void setParameters(Param & param) Sets the parameters