OPXLSpectrumProcessingAlgorithms

class pyopenms.OPXLSpectrumProcessingAlgorithms

Bases: object

Cython implementation of _OPXLSpectrumProcessingAlgorithms

Documentation is available at http://www.openms.de/current_doxygen/html/classOpenMS_1_1OPXLSpectrumProcessingAlgorithms.html

__init__()

• Cython signature: void OPXLSpectrumProcessingAlgorithms()

• Cython signature: void OPXLSpectrumProcessingAlgorithms(OPXLSpectrumProcessingAlgorithms &)

Methods

__init__	Cython signature: void OPXLSpectrumProcessingAlgorithms()
getSpectrumAlignmentFastCharge	Cython signature: void getSpectrumAlignmentFastCharge(libcpp_vector[libcpp_pair[size_t,size_t]] & alignment, double fragment_mass_tolerance, bool fragment_mass_tolerance_unit_ppm, const MSSpectrum & theo_spectrum, const MSSpectrum & exp_spectrum, const IntegerDataArray & theo_charges, const IntegerDataArray & exp_charges, FloatDataArray & ppm_error_array, double intensity_cutoff)
getSpectrumAlignmentSimple	Cython signature: void getSpectrumAlignmentSimple(libcpp_vector[libcpp_pair[size_t,size_t]] & alignment, double fragment_mass_tolerance, bool fragment_mass_tolerance_unit_ppm, const libcpp_vector[SimplePeak] & theo_spectrum, const MSSpectrum & exp_spectrum, const IntegerDataArray & exp_charges)
mergeAnnotatedSpectra	Cython signature: MSSpectrum mergeAnnotatedSpectra(MSSpectrum & first_spectrum, MSSpectrum & second_spectrum)
preprocessSpectra	Cython signature: MSExperiment preprocessSpectra(MSExperiment & exp, double fragment_mass_tolerance, bool fragment_mass_tolerance_unit_ppm, size_t peptide_min_size, int min_precursor_charge, int max_precursor_charge, bool deisotope, bool labeled)

getSpectrumAlignmentFastCharge()

Cython signature: void getSpectrumAlignmentFastCharge(libcpp_vector[libcpp_pair[size_t,size_t]] & alignment, double fragment_mass_tolerance, bool fragment_mass_tolerance_unit_ppm, const MSSpectrum & theo_spectrum, const MSSpectrum & exp_spectrum, const IntegerDataArray & theo_charges, const IntegerDataArray & exp_charges, FloatDataArray & ppm_error_array, double intensity_cutoff)

getSpectrumAlignmentSimple()

Cython signature: void getSpectrumAlignmentSimple(libcpp_vector[libcpp_pair[size_t,size_t]] & alignment, double fragment_mass_tolerance, bool fragment_mass_tolerance_unit_ppm, const libcpp_vector[SimplePeak] & theo_spectrum, const MSSpectrum & exp_spectrum, const IntegerDataArray & exp_charges)

mergeAnnotatedSpectra()

Cython signature: MSSpectrum mergeAnnotatedSpectra(MSSpectrum & first_spectrum, MSSpectrum & second_spectrum)

preprocessSpectra()

Cython signature: MSExperiment preprocessSpectra(MSExperiment & exp, double fragment_mass_tolerance, bool fragment_mass_tolerance_unit_ppm, size_t peptide_min_size, int min_precursor_charge, int max_precursor_charge, bool deisotope, bool labeled)