PepXMLFile

class pyopenms.PepXMLFile

Bases: object

Cython implementation of _PepXMLFile

Documentation is available at http://www.openms.de/current_doxygen/html/classOpenMS_1_1PepXMLFile.html

__init__()

Cython signature: void PepXMLFile()

Methods

__init__	Cython signature: void PepXMLFile()
keepNativeSpectrumName	Cython signature: void keepNativeSpectrumName(bool keep)
load	Cython signature: void load(String filename, libcpp_vector[ProteinIdentification] & protein_ids, libcpp_vector[PeptideIdentification] & peptide_ids)
setParseUnknownScores	Cython signature: void setParseUnknownScores(bool parse_unknown_scores)
store	Cython signature: void store(String filename, libcpp_vector[ProteinIdentification] & protein_ids, libcpp_vector[PeptideIdentification] & peptide_ids)

keepNativeSpectrumName()

Cython signature: void keepNativeSpectrumName(bool keep)

load()

• Cython signature: void load(String filename, libcpp_vector[ProteinIdentification] & protein_ids, libcpp_vector[PeptideIdentification] & peptide_ids)

• Cython signature: void load(String filename, libcpp_vector[ProteinIdentification] & protein_ids, libcpp_vector[PeptideIdentification] & peptide_ids, String experiment_name)

• Cython signature: void load(String filename, libcpp_vector[ProteinIdentification] & protein_ids, libcpp_vector[PeptideIdentification] & peptide_ids, String experiment_name, SpectrumMetaDataLookup lookup)

setParseUnknownScores()

Cython signature: void setParseUnknownScores(bool parse_unknown_scores)

store()

• Cython signature: void store(String filename, libcpp_vector[ProteinIdentification] & protein_ids, libcpp_vector[PeptideIdentification] & peptide_ids)

• Cython signature: void store(String filename, libcpp_vector[ProteinIdentification] & protein_ids, libcpp_vector[PeptideIdentification] & peptide_ids, String mz_file, String mz_name, bool peptideprophet_analyzed, double rt_tolerance)