SeedListGenerator

class pyopenms.SeedListGenerator

Bases: object

Cython implementation of _SeedListGenerator

Documentation is available at http://www.openms.de/current_doxygen/html/classOpenMS_1_1SeedListGenerator.html

__init__()

  • Cython signature: void SeedListGenerator()

  • Cython signature: void SeedListGenerator(SeedListGenerator &)

Methods

__init__

  • Cython signature: void SeedListGenerator()

convertSeedList

  • Cython signature: void convertSeedList(libcpp_vector[DPosition2] & seeds, FeatureMap & features)

generateSeedList

  • Cython signature: void generateSeedList(MSExperiment exp, libcpp_vector[DPosition2] & seeds)
convertSeedList()

  • Cython signature: void convertSeedList(libcpp_vector[DPosition2] & seeds, FeatureMap & features) Converts a list of seed positions to a feature map (expected format for FeatureFinder)

  • Cython signature: void convertSeedList(FeatureMap & features, libcpp_vector[DPosition2] & seeds) Converts a feature map with seed positions back to a simple list

generateSeedList()

  • Cython signature: void generateSeedList(MSExperiment exp, libcpp_vector[DPosition2] & seeds) Generate a seed list based on an MS experiment

  • Cython signature: void generateSeedList(libcpp_vector[PeptideIdentification] & peptides, libcpp_vector[DPosition2] & seeds, bool use_peptide_mass) Generates a seed list based on a list of peptide identifications