OptimizePeakDeconvolution

class pyopenms.OptimizePeakDeconvolution

Bases: object

Cython implementation of _OptimizePeakDeconvolution

Documentation is available at http://www.openms.de/current_doxygen/html/classOpenMS_1_1OptimizePeakDeconvolution.html

– Inherits from [‘DefaultParamHandler’]

__init__()

• Cython signature: void OptimizePeakDeconvolution()

• Cython signature: void OptimizePeakDeconvolution(OptimizePeakDeconvolution &)

Methods

__init__	Cython signature: void OptimizePeakDeconvolution()
getCharge	Cython signature: int getCharge() Returns the charge
getDefaults	Cython signature: Param getDefaults() Returns the default parameters
getName	Cython signature: String getName() Returns the name
getNumberOfPeaks_	Cython signature: size_t getNumberOfPeaks_(int charge, libcpp_vector[PeakShape] & temp_shapes, OptimizePeakDeconvolution_Data & data)
getParameters	Cython signature: Param getParameters() Returns the parameters
getPenalties	Cython signature: PenaltyFactorsIntensity getPenalties() Returns the penalty parameter
getSubsections	Cython signature: libcpp_vector[String] getSubsections()
optimize	Cython signature: bool optimize(libcpp_vector[PeakShape] & peaks, OptimizePeakDeconvolution_Data & data) Performs a nonlinear optimization of the peaks that belong to the current isotope pattern
setCharge	Cython signature: void setCharge(int charge) Sets the charge
setName	Cython signature: void setName(const String &) Sets the name
setParameters	Cython signature: void setParameters(Param & param) Sets the parameters
setPenalties	Cython signature: void setPenalties(PenaltyFactorsIntensity & penalties) Sets the penalty parameter

getCharge()

Cython signature: int getCharge() Returns the charge

getDefaults()

Cython signature: Param getDefaults() Returns the default parameters

getName()

Cython signature: String getName() Returns the name

getNumberOfPeaks_()

Cython signature: size_t getNumberOfPeaks_(int charge, libcpp_vector[PeakShape] & temp_shapes, OptimizePeakDeconvolution_Data & data)

getParameters()

Cython signature: Param getParameters() Returns the parameters

getPenalties()

Cython signature: PenaltyFactorsIntensity getPenalties() Returns the penalty parameter

getSubsections()

Cython signature: libcpp_vector[String] getSubsections()

optimize()

Cython signature: bool optimize(libcpp_vector[PeakShape] & peaks, OptimizePeakDeconvolution_Data & data) Performs a nonlinear optimization of the peaks that belong to the current isotope pattern

setCharge()

Cython signature: void setCharge(int charge) Sets the charge

setName()

Cython signature: void setName(const String &) Sets the name

setParameters()

Cython signature: void setParameters(Param & param) Sets the parameters

setPenalties()

Cython signature: void setPenalties(PenaltyFactorsIntensity & penalties) Sets the penalty parameter