IDDecoyProbability

class pyopenms.IDDecoyProbability

Bases: object

Cython implementation of _IDDecoyProbability

Documentation is available at http://www.openms.de/current_doxygen/html/classOpenMS_1_1IDDecoyProbability.html

– Inherits from [‘DefaultParamHandler’]

__init__()

  • Cython signature: void IDDecoyProbability() IDDecoyProbability calculates probabilities using decoy approach

  • Cython signature: void IDDecoyProbability(IDDecoyProbability)

Methods

__init__

  • Cython signature: void IDDecoyProbability()

apply

  • Cython signature: void apply(libcpp_vector[PeptideIdentification] & prob_ids, libcpp_vector[PeptideIdentification] & fwd_ids, libcpp_vector[PeptideIdentification] & rev_ids)

getDefaults

Cython signature: Param getDefaults() Returns the default parameters

getName

Cython signature: String getName() Returns the name

getParameters

Cython signature: Param getParameters() Returns the parameters

getSubsections

Cython signature: libcpp_vector[String] getSubsections()

setName

Cython signature: void setName(const String &) Sets the name

setParameters

Cython signature: void setParameters(Param & param) Sets the parameters
apply()

  • Cython signature: void apply(libcpp_vector[PeptideIdentification] & prob_ids, libcpp_vector[PeptideIdentification] & fwd_ids, libcpp_vector[PeptideIdentification] & rev_ids)

Parameters

  • prob_ids – Output of the algorithm which includes identifications with probability based scores

  • fwd_ids – Input parameter which represents the identifications of the forward search

  • rev_ids – Input parameter which represents the identifications of the reversed search - Cython signature: void apply(libcpp_vector[PeptideIdentification] & ids)

getDefaults()

Cython signature: Param getDefaults() Returns the default parameters

getName()

Cython signature: String getName() Returns the name

getParameters()

Cython signature: Param getParameters() Returns the parameters

getSubsections()

Cython signature: libcpp_vector[String] getSubsections()

setName()

Cython signature: void setName(const String &) Sets the name

setParameters()

Cython signature: void setParameters(Param & param) Sets the parameters