GNPSQuantificationFile

class pyopenms.GNPSQuantificationFile

Bases: object

Cython implementation of _GNPSQuantificationFile

Documentation is available at http://www.openms.de/current_doxygen/html/classOpenMS_1_1GNPSQuantificationFile.html

__init__()

  • Cython signature: void GNPSQuantificationFile()

  • Cython signature: void GNPSQuantificationFile(GNPSQuantificationFile &)

Methods

__init__

  • Cython signature: void GNPSQuantificationFile()

store

Cython signature: void store(const ConsensusMap & consensus_map, const String & output_file)
store()

Cython signature: void store(const ConsensusMap & consensus_map, const String & output_file)

Write feature quantification table (txt file) from a ConsensusMap. Required for GNPS FBMN.

The table contains map information on the featureXML files from which the ConsensusMap was generated as well as a row for every consensus feature with information on rt, mz, intensity, width and quality. The same information is added for each original feature in the consensus feature.

consensus_mapConsensusMap

Input ConsensusMap annotated with IonIdentityMolecularNetworking.annotateConsensusMap.

output_filestr

Output file path for the feature quantification table.