ProteinResolver

class pyopenms.ProteinResolver

Bases: object

Cython implementation of _ProteinResolver

Documentation is available at http://www.openms.de/current_doxygen/html/classOpenMS_1_1ProteinResolver.html

– Inherits from [‘DefaultParamHandler’]

__init__()

  • Cython signature: void ProteinResolver()

  • Cython signature: void ProteinResolver(ProteinResolver &)

Methods

__init__

  • Cython signature: void ProteinResolver()

clearResult

Cython signature: void clearResult()

countTargetDecoy

  • Cython signature: void countTargetDecoy(libcpp_vector[MSDGroup] & msd_groups, ConsensusMap & consensus)

getDefaults

Cython signature: Param getDefaults() Returns the default parameters

getName

Cython signature: String getName() Returns the name

getParameters

Cython signature: Param getParameters() Returns the parameters

getPeptideHit

  • Cython signature: PeptideHit getPeptideHit(ConsensusMap & consensus, PeptideEntry * peptide)

getPeptideIdentification

  • Cython signature: PeptideIdentification getPeptideIdentification(ConsensusMap & consensus, PeptideEntry * peptide)

getResults

Cython signature: libcpp_vector[ResolverResult] getResults()

getSubsections

Cython signature: libcpp_vector[String] getSubsections()

resolveConsensus

Cython signature: void resolveConsensus(ConsensusMap & consensus)

resolveID

Cython signature: void resolveID(libcpp_vector[PeptideIdentification] & peptide_identifications)

setName

Cython signature: void setName(const String &) Sets the name

setParameters

Cython signature: void setParameters(Param & param) Sets the parameters

setProteinData

Cython signature: void setProteinData(libcpp_vector[FASTAEntry] & protein_data)
clearResult()

Cython signature: void clearResult()

countTargetDecoy()

  • Cython signature: void countTargetDecoy(libcpp_vector[MSDGroup] & msd_groups, ConsensusMap & consensus)

  • Cython signature: void countTargetDecoy(libcpp_vector[MSDGroup] & msd_groups, libcpp_vector[PeptideIdentification] & peptide_nodes)

getDefaults()

Cython signature: Param getDefaults() Returns the default parameters

getName()

Cython signature: String getName() Returns the name

getParameters()

Cython signature: Param getParameters() Returns the parameters

getPeptideHit()

  • Cython signature: PeptideHit getPeptideHit(ConsensusMap & consensus, PeptideEntry * peptide)

  • Cython signature: PeptideHit getPeptideHit(libcpp_vector[PeptideIdentification] & peptide_nodes, PeptideEntry * peptide)

getPeptideIdentification()

  • Cython signature: PeptideIdentification getPeptideIdentification(ConsensusMap & consensus, PeptideEntry * peptide)

  • Cython signature: PeptideIdentification getPeptideIdentification(libcpp_vector[PeptideIdentification] & peptide_nodes, PeptideEntry * peptide)

getResults()

Cython signature: libcpp_vector[ResolverResult] getResults()

getSubsections()

Cython signature: libcpp_vector[String] getSubsections()

resolveConsensus()

Cython signature: void resolveConsensus(ConsensusMap & consensus)

resolveID()

Cython signature: void resolveID(libcpp_vector[PeptideIdentification] & peptide_identifications)

setName()

Cython signature: void setName(const String &) Sets the name

setParameters()

Cython signature: void setParameters(Param & param) Sets the parameters

setProteinData()

Cython signature: void setProteinData(libcpp_vector[FASTAEntry] & protein_data)