MzQCFile

class pyopenms.MzQCFile

Bases: object

Cython implementation of _MzQCFile

Documentation is available at http://www.openms.de/current_doxygen/html/classOpenMS_1_1MzQCFile.html

This class collects the data for the mzQC File

__init__()

Cython signature: void MzQCFile()

Methods

__init__	Cython signature: void MzQCFile()
store	Cython signature: void store(String input_file, String output_file, MSExperiment & exp, String contact_name, String contact_address, String description, String label, FeatureMap & feature_map, libcpp_vector[ProteinIdentification] & prot_ids, libcpp_vector[PeptideIdentification] & pep_ids)

store()

Cython signature: void store(String input_file, String output_file, MSExperiment & exp, String contact_name, String contact_address, String description, String label, FeatureMap & feature_map, libcpp_vector[ProteinIdentification] & prot_ids, libcpp_vector[PeptideIdentification] & pep_ids)

Stores QC data in mzQC file with JSON format :param input_file: MzML input file name :param output_file: MzQC output file name :param exp: MSExperiment to extract QC data from, prior sortSpectra() and updateRanges() required :param contact_name: Name of the person creating the mzQC file :param contact_address: Contact address (mail/e-mail or phone) of the person creating the mzQC file :param description: Description and comments about the mzQC file contents :param label: Qnique and informative label for the run :param feature_map: FeatureMap from feature file (featureXML) :param prot_ids: Protein identifications from ID file (idXML) :param pep_ids: Protein identifications from ID file (idXML)