ProteinInference

class pyopenms.ProteinInference

Bases: object

Cython implementation of _ProteinInference

Documentation is available at http://www.openms.de/current_doxygen/html/classOpenMS_1_1ProteinInference.html

Infers protein ratios from peptide ratios (currently using unique peptides only). Use the IDMapper class to add protein and peptide information to a quantitative ConsensusMap prior to this step

__init__()

• Cython signature: void ProteinInference()

• Cython signature: void ProteinInference(ProteinInference &)

Methods

__init__	Cython signature: void ProteinInference()
infer	Cython signature: void infer(ConsensusMap & consensus_map, unsigned int reference_map)

infer()

Cython signature: void infer(ConsensusMap & consensus_map, unsigned int reference_map)

Infers protein ratios from peptide ratios (currently using unique peptides only). Use the IDMapper class to add protein and peptide information to a quantitative ConsensusMap prior to this step —– :param consensus_map: Peptide quantitation with ProteinIdentifications attached, where

Protein quantitation will be attached

Parameters

reference_map – Index of (iTRAQ) reference channel within the consensus map