DigestionEnzyme

class pyopenms.DigestionEnzyme

Bases: object

Cython implementation of _DigestionEnzyme

Documentation is available at http://www.openms.de/current_doxygen/html/classOpenMS_1_1DigestionEnzyme.html

Base class for digestion enzymes

__init__()

• Cython signature: void DigestionEnzyme(DigestionEnzyme &)

• Cython signature: void DigestionEnzyme(const String & name, const String & cleavage_regex, libcpp_set[String] & synonyms, String regex_description)

Methods

__init__	Cython signature: void DigestionEnzyme(DigestionEnzyme &)
addSynonym	Cython signature: void addSynonym(const String & synonym) Adds a synonym
getName	Cython signature: String getName() Returns the name of the enzyme
getRegEx	Cython signature: String getRegEx() Returns the cleavage regex
getRegExDescription	Cython signature: String getRegExDescription() Returns the regex description
getSynonyms	Cython signature: libcpp_set[String] getSynonyms() Returns the synonyms
setName	Cython signature: void setName(const String & name) Sets the name of the enzyme
setRegEx	Cython signature: void setRegEx(const String & cleavage_regex) Sets the cleavage regex
setRegExDescription	Cython signature: void setRegExDescription(const String & value) Sets the regex description
setSynonyms	Cython signature: void setSynonyms(libcpp_set[String] & synonyms) Sets the synonyms
setValueFromFile	Cython signature: bool setValueFromFile(String key, String value) Sets the value of a member variable based on an entry from an input file

addSynonym()

Cython signature: void addSynonym(const String & synonym) Adds a synonym

getName()

Cython signature: String getName() Returns the name of the enzyme

getRegEx()

Cython signature: String getRegEx() Returns the cleavage regex

getRegExDescription()

Cython signature: String getRegExDescription() Returns the regex description

getSynonyms()

Cython signature: libcpp_set[String] getSynonyms() Returns the synonyms

setName()

Cython signature: void setName(const String & name) Sets the name of the enzyme

setRegEx()

Cython signature: void setRegEx(const String & cleavage_regex) Sets the cleavage regex

setRegExDescription()

Cython signature: void setRegExDescription(const String & value) Sets the regex description

setSynonyms()

Cython signature: void setSynonyms(libcpp_set[String] & synonyms) Sets the synonyms

setValueFromFile()

Cython signature: bool setValueFromFile(String key, String value) Sets the value of a member variable based on an entry from an input file