DIAScoring

class pyopenms.DIAScoring

Bases: object

Cython implementation of _DIAScoring

Documentation is available at http://www.openms.de/current_doxygen/html/classOpenMS_1_1DIAScoring.html

– Inherits from [‘DefaultParamHandler’]

__init__()

Cython signature: void DIAScoring()

Methods

__init__	Cython signature: void DIAScoring()
dia_by_ion_score
dia_ms1_isotope_scores	Cython signature: void dia_ms1_isotope_scores(double precursor_mz, shared_ptr[OSSpectrum] spectrum, double & isotope_corr, double & isotope_overlap, EmpiricalFormula & sum_formula)
dia_ms1_isotope_scores_averagine	Cython signature: void dia_ms1_isotope_scores_averagine(double precursor_mz, shared_ptr[OSSpectrum] spectrum, double & isotope_corr, double & isotope_overlap, int charge_state)
dia_ms1_massdiff_score	Cython signature: bool dia_ms1_massdiff_score(double precursor_mz, shared_ptr[OSSpectrum] spectrum, double & ppm_score)
getDefaults	Cython signature: Param getDefaults() Returns the default parameters
getName	Cython signature: String getName() Returns the name
getParameters	Cython signature: Param getParameters() Returns the parameters
getSubsections	Cython signature: libcpp_vector[String] getSubsections()
score_with_isotopes	Cython signature: void score_with_isotopes(shared_ptr[OSSpectrum] spectrum, libcpp_vector[LightTransition] transitions, double & dotprod, double & manhattan)
setName	Cython signature: void setName(const String &) Sets the name
setParameters	Cython signature: void setParameters(Param & param) Sets the parameters

dia_by_ion_score()

dia_ms1_isotope_scores()

Cython signature: void dia_ms1_isotope_scores(double precursor_mz, shared_ptr[OSSpectrum] spectrum, double & isotope_corr, double & isotope_overlap, EmpiricalFormula & sum_formula)

dia_ms1_isotope_scores_averagine()

Cython signature: void dia_ms1_isotope_scores_averagine(double precursor_mz, shared_ptr[OSSpectrum] spectrum, double & isotope_corr, double & isotope_overlap, int charge_state)

dia_ms1_massdiff_score()

Cython signature: bool dia_ms1_massdiff_score(double precursor_mz, shared_ptr[OSSpectrum] spectrum, double & ppm_score)

getDefaults()

Cython signature: Param getDefaults() Returns the default parameters

getName()

Cython signature: String getName() Returns the name

getParameters()

Cython signature: Param getParameters() Returns the parameters

getSubsections()

Cython signature: libcpp_vector[String] getSubsections()

score_with_isotopes()

Cython signature: void score_with_isotopes(shared_ptr[OSSpectrum] spectrum, libcpp_vector[LightTransition] transitions, double & dotprod, double & manhattan)

setName()

Cython signature: void setName(const String &) Sets the name

setParameters()

Cython signature: void setParameters(Param & param) Sets the parameters