CVTerm_ControlledVocabulary

class pyopenms.CVTerm_ControlledVocabulary

Bases: object

Cython implementation of _CVTerm_ControlledVocabulary

Documentation is available at http://www.openms.de/current_doxygen/html/classOpenMS_1_1CVTerm_ControlledVocabulary.html

__init__()

• Cython signature: void CVTerm_ControlledVocabulary()

• Cython signature: void CVTerm_ControlledVocabulary(CVTerm_ControlledVocabulary rhs)

Methods

__init__	Cython signature: void CVTerm_ControlledVocabulary()
getXRefTypeName	Cython signature: String getXRefTypeName(XRefType_CVTerm_ControlledVocabulary type)
isHigherBetterScore	Cython signature: bool isHigherBetterScore(CVTerm_ControlledVocabulary term)
toXMLString	Cython signature: String toXMLString(String ref, String value)

Attributes

children
description
id
name
obsolete
parents
synonyms
units
unparsed
xref_binary
xref_type

children

description

getXRefTypeName()

Cython signature: String getXRefTypeName(XRefType_CVTerm_ControlledVocabulary type)

id

isHigherBetterScore()

Cython signature: bool isHigherBetterScore(CVTerm_ControlledVocabulary term)

name

obsolete

parents

synonyms

toXMLString()

• Cython signature: String toXMLString(String ref, String value) Get mzidentml formatted string. i.e. a cvparam xml element, ref should be the name of the ControlledVocabulary (i.e. cv.name()) containing the CVTerm (e.g. PSI-MS for the psi-ms.obo - gets loaded in all cases like that??), value can be empty if not available

• Cython signature: String toXMLString(String ref, DataValue value) Get mzidentml formatted string. i.e. a cvparam xml element, ref should be the name of the ControlledVocabulary (i.e. cv.name()) containing the CVTerm (e.g. PSI-MS for the psi-ms.obo - gets loaded in all cases like that??), value can be empty if not available

units

unparsed

xref_binary

xref_type