SemanticValidator

class pyopenms.SemanticValidator

Bases: object

Cython implementation of _SemanticValidator

Documentation is available at http://www.openms.de/current_doxygen/html/classOpenMS::Internal_1_1SemanticValidator.html

__init__(): Cython signature: void SemanticValidator(CVMappings mapping, ControlledVocabulary cv)

Methods

`__init__`	Cython signature: void SemanticValidator(CVMappings mapping, ControlledVocabulary cv)
`locateTerm`	Cython signature: bool locateTerm(String path, SemanticValidator_CVTerm & parsed_term) Checks if a CVTerm is allowed in a given path
`setAccessionAttribute`	Cython signature: void setAccessionAttribute(String accession) Sets the name of the attribute for accessions in the CV parameter tag name (default 'accession')
`setCheckTermValueTypes`	Cython signature: void setCheckTermValueTypes(bool check) Sets if CV term value types should be check (enabled by default)
`setCheckUnits`	Cython signature: void setCheckUnits(bool check) Sets if CV term units should be check (disabled by default)
`setNameAttribute`	Cython signature: void setNameAttribute(String name) Sets the name of the attribute for accessions in the CV parameter tag name (default 'name')
`setTag`	Cython signature: void setTag(String tag) Sets the CV parameter tag name (default 'cvParam')
`setUnitAccessionAttribute`	Cython signature: void setUnitAccessionAttribute(String accession) Sets the name of the unit accession attribute (default 'unitAccession')
`setUnitNameAttribute`	Cython signature: void setUnitNameAttribute(String name) Sets the name of the unit name attribute (default 'unitName')
`setValueAttribute`	Cython signature: void setValueAttribute(String value) Sets the name of the attribute for accessions in the CV parameter tag name (default 'value')
`validate`	Cython signature: bool validate(String filename, StringList errors, StringList warnings)

locateTerm(): Cython signature: bool locateTerm(String path, SemanticValidator_CVTerm & parsed_term) Checks if a CVTerm is allowed in a given path

setAccessionAttribute(): Cython signature: void setAccessionAttribute(String accession) Sets the name of the attribute for accessions in the CV parameter tag name (default ‘accession’)

setCheckTermValueTypes(): Cython signature: void setCheckTermValueTypes(bool check) Sets if CV term value types should be check (enabled by default)

setCheckUnits(): Cython signature: void setCheckUnits(bool check) Sets if CV term units should be check (disabled by default)

setNameAttribute(): Cython signature: void setNameAttribute(String name) Sets the name of the attribute for accessions in the CV parameter tag name (default ‘name’)

setTag(): Cython signature: void setTag(String tag) Sets the CV parameter tag name (default ‘cvParam’)

setUnitAccessionAttribute(): Cython signature: void setUnitAccessionAttribute(String accession) Sets the name of the unit accession attribute (default ‘unitAccession’)

setUnitNameAttribute(): Cython signature: void setUnitNameAttribute(String name) Sets the name of the unit name attribute (default ‘unitName’)

setValueAttribute(): Cython signature: void setValueAttribute(String value) Sets the name of the attribute for accessions in the CV parameter tag name (default ‘value’)

validate(): Cython signature: bool validate(String filename, StringList errors, StringList warnings)