IncludeExcludeTarget

class pyopenms.IncludeExcludeTarget

Bases: object

Cython implementation of _IncludeExcludeTarget

Documentation is available at http://www.openms.de/current_doxygen/html/classOpenMS_1_1IncludeExcludeTarget.html

__init__()

• Cython signature: void IncludeExcludeTarget() This class stores a SRM/MRM transition

• Cython signature: void IncludeExcludeTarget(IncludeExcludeTarget &)

Methods

__init__	Cython signature: void IncludeExcludeTarget()
addCVTerm	Cython signature: void addCVTerm(CVTerm & term)
addConfiguration	Cython signature: void addConfiguration(Configuration & configuration)
addInterpretation	Cython signature: void addInterpretation(CVTermList & interpretation)
addPrecursorCVTerm	Cython signature: void addPrecursorCVTerm(CVTerm & cv_term)
addPredictionTerm	Cython signature: void addPredictionTerm(CVTerm & prediction)
addProductCVTerm	Cython signature: void addProductCVTerm(CVTerm & cv_term)
empty	Cython signature: bool empty()
getCVTerms	Cython signature: libcpp_map[String,libcpp_vector[CVTerm]] getCVTerms()
getCompoundRef	Cython signature: String getCompoundRef()
getConfigurations	Cython signature: libcpp_vector[Configuration] getConfigurations()
getInterpretations	Cython signature: libcpp_vector[CVTermList] getInterpretations()
getName	Cython signature: String getName()
getPeptideRef	Cython signature: String getPeptideRef()
getPrecursorCVTermList	Cython signature: CVTermList getPrecursorCVTermList()
getPrecursorMZ	Cython signature: double getPrecursorMZ()
getPrediction	Cython signature: CVTermList getPrediction()
getProductCVTermList	Cython signature: CVTermList getProductCVTermList()
getProductMZ	Cython signature: double getProductMZ()
getRetentionTime	Cython signature: RetentionTime getRetentionTime()
hasCVTerm	Cython signature: bool hasCVTerm(String accession)
replaceCVTerm	Cython signature: void replaceCVTerm(CVTerm & term)
replaceCVTerms	Cython signature: void replaceCVTerms(libcpp_vector[CVTerm] cv_terms, String accession)
setCVTerms	Cython signature: void setCVTerms(libcpp_vector[CVTerm] & terms)
setCompoundRef	Cython signature: void setCompoundRef(const String & compound_ref)
setConfigurations	Cython signature: void setConfigurations(libcpp_vector[Configuration] & configuration)
setInterpretations	Cython signature: void setInterpretations(libcpp_vector[CVTermList] & interpretations)
setName	Cython signature: void setName(const String & name)
setPeptideRef	Cython signature: void setPeptideRef(const String & peptide_ref)
setPrecursorCVTermList	Cython signature: void setPrecursorCVTermList(CVTermList & list_)
setPrecursorMZ	Cython signature: void setPrecursorMZ(double mz)
setPrediction	Cython signature: void setPrediction(CVTermList & prediction)
setProductCVTermList	Cython signature: void setProductCVTermList(CVTermList & list_)
setProductMZ	Cython signature: void setProductMZ(double mz)
setRetentionTime	Cython signature: void setRetentionTime(RetentionTime rt)

addCVTerm()

Cython signature: void addCVTerm(CVTerm & term)

addConfiguration()

Cython signature: void addConfiguration(Configuration & configuration)

addInterpretation()

Cython signature: void addInterpretation(CVTermList & interpretation)

addPrecursorCVTerm()

Cython signature: void addPrecursorCVTerm(CVTerm & cv_term)

addPredictionTerm()

Cython signature: void addPredictionTerm(CVTerm & prediction)

addProductCVTerm()

Cython signature: void addProductCVTerm(CVTerm & cv_term)

empty()

Cython signature: bool empty()

getCVTerms()

Cython signature: libcpp_map[String,libcpp_vector[CVTerm]] getCVTerms()

getCompoundRef()

Cython signature: String getCompoundRef()

getConfigurations()

Cython signature: libcpp_vector[Configuration] getConfigurations()

getInterpretations()

Cython signature: libcpp_vector[CVTermList] getInterpretations()

getName()

Cython signature: String getName()

getPeptideRef()

Cython signature: String getPeptideRef()

getPrecursorCVTermList()

Cython signature: CVTermList getPrecursorCVTermList()

getPrecursorMZ()

Cython signature: double getPrecursorMZ()

getPrediction()

Cython signature: CVTermList getPrediction()

getProductCVTermList()

Cython signature: CVTermList getProductCVTermList()

getProductMZ()

Cython signature: double getProductMZ()

getRetentionTime()

Cython signature: RetentionTime getRetentionTime()

hasCVTerm()

Cython signature: bool hasCVTerm(String accession)

replaceCVTerm()

Cython signature: void replaceCVTerm(CVTerm & term)

replaceCVTerms()

• Cython signature: void replaceCVTerms(libcpp_vector[CVTerm] cv_terms, String accession)

• Cython signature: void replaceCVTerms(libcpp_map[String,libcpp_vector[CVTerm]] cv_term_map)

setCVTerms()

Cython signature: void setCVTerms(libcpp_vector[CVTerm] & terms)

setCompoundRef()

Cython signature: void setCompoundRef(const String & compound_ref)

setConfigurations()

Cython signature: void setConfigurations(libcpp_vector[Configuration] & configuration)

setInterpretations()

Cython signature: void setInterpretations(libcpp_vector[CVTermList] & interpretations)

setName()

Cython signature: void setName(const String & name)

setPeptideRef()

Cython signature: void setPeptideRef(const String & peptide_ref)

setPrecursorCVTermList()

Cython signature: void setPrecursorCVTermList(CVTermList & list_)

setPrecursorMZ()

Cython signature: void setPrecursorMZ(double mz)

setPrediction()

Cython signature: void setPrediction(CVTermList & prediction)

setProductCVTermList()

Cython signature: void setProductCVTermList(CVTermList & list_)

setProductMZ()

Cython signature: void setProductMZ(double mz)

setRetentionTime()

Cython signature: void setRetentionTime(RetentionTime rt)