OfflinePrecursorIonSelection

class pyopenms.OfflinePrecursorIonSelection

Bases: object

Cython implementation of _OfflinePrecursorIonSelection

Documentation is available at http://www.openms.de/current_doxygen/html/classOpenMS_1_1OfflinePrecursorIonSelection.html

– Inherits from [‘DefaultParamHandler’]

__init__()

• Cython signature: void OfflinePrecursorIonSelection()

• Cython signature: void OfflinePrecursorIonSelection(OfflinePrecursorIonSelection &)

Methods

__init__	Cython signature: void OfflinePrecursorIonSelection()
createProteinSequenceBasedLPInclusionList	Cython signature: void createProteinSequenceBasedLPInclusionList(String include_, String rt_model_file, String pt_model_file, FeatureMap & precursors)
getDefaults	Cython signature: Param getDefaults() Returns the default parameters
getLPSolver	Cython signature: SOLVER getLPSolver()
getName	Cython signature: String getName() Returns the name
getParameters	Cython signature: Param getParameters() Returns the parameters
getSubsections	Cython signature: libcpp_vector[String] getSubsections()
makePrecursorSelectionForKnownLCMSMap	Cython signature: void makePrecursorSelectionForKnownLCMSMap(FeatureMap & features, MSExperiment & experiment, MSExperiment & ms2, libcpp_set[int] & charges_set, bool feature_based)
setLPSolver	Cython signature: void setLPSolver(SOLVER solver)
setName	Cython signature: void setName(const String &) Sets the name
setParameters	Cython signature: void setParameters(Param & param) Sets the parameters

createProteinSequenceBasedLPInclusionList()

Cython signature: void createProteinSequenceBasedLPInclusionList(String include_, String rt_model_file, String pt_model_file, FeatureMap & precursors)

getDefaults()

Cython signature: Param getDefaults() Returns the default parameters

getLPSolver()

Cython signature: SOLVER getLPSolver()

getName()

Cython signature: String getName() Returns the name

getParameters()

Cython signature: Param getParameters() Returns the parameters

getSubsections()

Cython signature: libcpp_vector[String] getSubsections()

makePrecursorSelectionForKnownLCMSMap()

Cython signature: void makePrecursorSelectionForKnownLCMSMap(FeatureMap & features, MSExperiment & experiment, MSExperiment & ms2, libcpp_set[int] & charges_set, bool feature_based)

Parameters

• features – Input feature map

• experiment – Input raw data

• ms2 – Precursors are added as empty MS2 spectra to this MSExperiment

• charges_set – Allowed charge states

• feature_based – If true the selection is feature based, if false it is scan based and the highest signals in each spectrum are chosen

setLPSolver()

Cython signature: void setLPSolver(SOLVER solver)

setName()

Cython signature: void setName(const String &) Sets the name

setParameters()

Cython signature: void setParameters(Param & param) Sets the parameters