TransitionTSVFile

class pyopenms.TransitionTSVFile

Bases: object

Cython implementation of _TransitionTSVFile

Documentation is available at http://www.openms.de/current_doxygen/html/classOpenMS_1_1TransitionTSVFile.html

– Inherits from [‘ProgressLogger’]

__init__()

  • Cython signature: void TransitionTSVFile()

  • Cython signature: void TransitionTSVFile(TransitionTSVFile &)

Methods

__init__

  • Cython signature: void TransitionTSVFile()

convertTSVToTargetedExperiment

  • Cython signature: void convertTSVToTargetedExperiment(char * filename, FileType filetype, TargetedExperiment & targeted_exp)

convertTargetedExperimentToTSV

Cython signature: void convertTargetedExperimentToTSV(char * filename, TargetedExperiment & targeted_exp) Write out a targeted experiment (TraML structure) into a tsv file

endProgress

Cython signature: void endProgress() Ends the progress display

getLogType

Cython signature: LogType getLogType() Returns the type of progress log being used

nextProgress

Cython signature: void nextProgress() Increment progress by 1 (according to range begin-end)

setLogType

Cython signature: void setLogType(LogType) Sets the progress log that should be used.

setProgress

Cython signature: void setProgress(ptrdiff_t value) Sets the current progress

startProgress

Cython signature: void startProgress(ptrdiff_t begin, ptrdiff_t end, String label)

validateTargetedExperiment

Cython signature: void validateTargetedExperiment(TargetedExperiment targeted_exp) Validate a TargetedExperiment (check that all ids are unique)
convertTSVToTargetedExperiment()

  • Cython signature: void convertTSVToTargetedExperiment(char * filename, FileType filetype, TargetedExperiment & targeted_exp) Read in a tsv/mrm file and construct a targeted experiment (TraML structure)

  • Cython signature: void convertTSVToTargetedExperiment(char * filename, FileType filetype, LightTargetedExperiment & targeted_exp) Read in a tsv file and construct a targeted experiment (Light transition structure)

convertTargetedExperimentToTSV()

Cython signature: void convertTargetedExperimentToTSV(char * filename, TargetedExperiment & targeted_exp) Write out a targeted experiment (TraML structure) into a tsv file

endProgress()

Cython signature: void endProgress() Ends the progress display

getLogType()

Cython signature: LogType getLogType() Returns the type of progress log being used

nextProgress()

Cython signature: void nextProgress() Increment progress by 1 (according to range begin-end)

setLogType()

Cython signature: void setLogType(LogType) Sets the progress log that should be used. The default type is NONE!

setProgress()

Cython signature: void setProgress(ptrdiff_t value) Sets the current progress

startProgress()

Cython signature: void startProgress(ptrdiff_t begin, ptrdiff_t end, String label)

validateTargetedExperiment()

Cython signature: void validateTargetedExperiment(TargetedExperiment targeted_exp) Validate a TargetedExperiment (check that all ids are unique)