PeakPickerIterative

class pyopenms.PeakPickerIterative

Bases: object

Cython implementation of _PeakPickerIterative

Documentation is available at http://www.openms.de/current_doxygen/html/classOpenMS_1_1PeakPickerIterative.html: – Inherits from [‘DefaultParamHandler’, ‘ProgressLogger’]

__init__()

Cython signature: void PeakPickerIterative()
Cython signature: void PeakPickerIterative(PeakPickerIterative &)

Methods

`__init__`	Cython signature: void PeakPickerIterative()
`endProgress`	Cython signature: void endProgress() Ends the progress display
`getDefaults`	Cython signature: Param getDefaults() Returns the default parameters
`getLogType`	Cython signature: LogType getLogType() Returns the type of progress log being used
`getName`	Cython signature: String getName() Returns the name
`getParameters`	Cython signature: Param getParameters() Returns the parameters
`getSubsections`	Cython signature: libcpp_vector[String] getSubsections()
`nextProgress`	Cython signature: void nextProgress() Increment progress by 1 (according to range begin-end)
`pick`	Cython signature: void pick(MSSpectrum & input, MSSpectrum & output)
`pickExperiment`	Cython signature: void pickExperiment(MSExperiment & input, MSExperiment & output)
`setLogType`	Cython signature: void setLogType(LogType) Sets the progress log that should be used.
`setName`	Cython signature: void setName(const String &) Sets the name
`setParameters`	Cython signature: void setParameters(Param & param) Sets the parameters
`setProgress`	Cython signature: void setProgress(ptrdiff_t value) Sets the current progress
`startProgress`	Cython signature: void startProgress(ptrdiff_t begin, ptrdiff_t end, String label)

endProgress(): Cython signature: void endProgress() Ends the progress display

getDefaults(): Cython signature: Param getDefaults() Returns the default parameters

getLogType(): Cython signature: LogType getLogType() Returns the type of progress log being used

getName(): Cython signature: String getName() Returns the name

getParameters(): Cython signature: Param getParameters() Returns the parameters

getSubsections(): Cython signature: libcpp_vector[String] getSubsections()

nextProgress(): Cython signature: void nextProgress() Increment progress by 1 (according to range begin-end)

pick()

Cython signature: void pick(MSSpectrum & input, MSSpectrum & output)

This will pick one single spectrum. The PeakPickerHiRes is used to generate seeds, these seeds are then used to re-center the mass and compute peak width and integrated intensity of the peak —– Finally, other peaks that would fall within the primary peak are discarded —– The output are the remaining peaks

pickExperiment(): Cython signature: void pickExperiment(MSExperiment & input, MSExperiment & output)

setLogType(): Cython signature: void setLogType(LogType) Sets the progress log that should be used. The default type is NONE!

setName(): Cython signature: void setName(const String &) Sets the name

setParameters(): Cython signature: void setParameters(Param & param) Sets the parameters

setProgress(): Cython signature: void setProgress(ptrdiff_t value) Sets the current progress

startProgress(): Cython signature: void startProgress(ptrdiff_t begin, ptrdiff_t end, String label)