SimpleSearchEngineAlgorithm

class pyopenms.SimpleSearchEngineAlgorithm

Bases: object

Cython implementation of _SimpleSearchEngineAlgorithm

Documentation is available at http://www.openms.de/current_doxygen/html/classOpenMS_1_1SimpleSearchEngineAlgorithm.html

– Inherits from [‘DefaultParamHandler’, ‘ProgressLogger’]

__init__()

• Cython signature: void SimpleSearchEngineAlgorithm()

• Cython signature: void SimpleSearchEngineAlgorithm(SimpleSearchEngineAlgorithm &)

Methods

__init__	Cython signature: void SimpleSearchEngineAlgorithm()
endProgress	Cython signature: void endProgress() Ends the progress display
getDefaults	Cython signature: Param getDefaults() Returns the default parameters
getLogType	Cython signature: LogType getLogType() Returns the type of progress log being used
getName	Cython signature: String getName() Returns the name
getParameters	Cython signature: Param getParameters() Returns the parameters
getSubsections	Cython signature: libcpp_vector[String] getSubsections()
nextProgress	Cython signature: void nextProgress() Increment progress by 1 (according to range begin-end)
search	Cython signature: void search(const String & in_mzML, const String & in_db, libcpp_vector[ProteinIdentification] & prot_ids, libcpp_vector[PeptideIdentification] & pep_ids)
setLogType	Cython signature: void setLogType(LogType) Sets the progress log that should be used.
setName	Cython signature: void setName(const String &) Sets the name
setParameters	Cython signature: void setParameters(Param & param) Sets the parameters
setProgress	Cython signature: void setProgress(ptrdiff_t value) Sets the current progress
startProgress	Cython signature: void startProgress(ptrdiff_t begin, ptrdiff_t end, String label)

endProgress()

Cython signature: void endProgress() Ends the progress display

getDefaults()

Cython signature: Param getDefaults() Returns the default parameters

getLogType()

Cython signature: LogType getLogType() Returns the type of progress log being used

getName()

Cython signature: String getName() Returns the name

getParameters()

Cython signature: Param getParameters() Returns the parameters

getSubsections()

Cython signature: libcpp_vector[String] getSubsections()

nextProgress()

Cython signature: void nextProgress() Increment progress by 1 (according to range begin-end)

search()

Cython signature: void search(const String & in_mzML, const String & in_db, libcpp_vector[ProteinIdentification] & prot_ids, libcpp_vector[PeptideIdentification] & pep_ids)

setLogType()

Cython signature: void setLogType(LogType) Sets the progress log that should be used. The default type is NONE!

setName()

Cython signature: void setName(const String &) Sets the name

setParameters()

Cython signature: void setParameters(Param & param) Sets the parameters

setProgress()

Cython signature: void setProgress(ptrdiff_t value) Sets the current progress

startProgress()

Cython signature: void startProgress(ptrdiff_t begin, ptrdiff_t end, String label)