MRMTransitionGroupPicker

class pyopenms.MRMTransitionGroupPicker

Bases: object

Cython implementation of _MRMTransitionGroupPicker

Documentation is available at http://www.openms.de/current_doxygen/html/classOpenMS_1_1MRMTransitionGroupPicker.html

– Inherits from [‘DefaultParamHandler’]

__init__()

• Cython signature: void MRMTransitionGroupPicker()

• Cython signature: void MRMTransitionGroupPicker(MRMTransitionGroupPicker &)

Methods

__init__	Cython signature: void MRMTransitionGroupPicker()
createMRMFeature	Cython signature: MRMFeature createMRMFeature(LightMRMTransitionGroupCP transition_group, libcpp_vector[MSChromatogram] & picked_chroms, libcpp_vector[MSChromatogram] & smoothed_chroms, const int chr_idx, const int peak_idx)
findLargestPeak	Cython signature: void findLargestPeak(libcpp_vector[MSChromatogram] & picked_chroms, int & chr_idx, int & peak_idx)
findWidestPeakIndices	Cython signature: void findWidestPeakIndices(libcpp_vector[MSChromatogram] & picked_chroms, int & chrom_idx, int & point_idx)
getDefaults	Cython signature: Param getDefaults() Returns the default parameters
getName	Cython signature: String getName() Returns the name
getParameters	Cython signature: Param getParameters() Returns the parameters
getSubsections	Cython signature: libcpp_vector[String] getSubsections()
pickTransitionGroup	Cython signature: void pickTransitionGroup(LightMRMTransitionGroupCP transition_group)
remove_overlapping_features	Cython signature: void remove_overlapping_features(libcpp_vector[MSChromatogram] & picked_chroms, double best_left, double best_right)
setName	Cython signature: void setName(const String &) Sets the name
setParameters	Cython signature: void setParameters(Param & param) Sets the parameters

createMRMFeature()

Cython signature: MRMFeature createMRMFeature(LightMRMTransitionGroupCP transition_group, libcpp_vector[MSChromatogram] & picked_chroms, libcpp_vector[MSChromatogram] & smoothed_chroms, const int chr_idx, const int peak_idx)

findLargestPeak()

Cython signature: void findLargestPeak(libcpp_vector[MSChromatogram] & picked_chroms, int & chr_idx, int & peak_idx)

findWidestPeakIndices()

Cython signature: void findWidestPeakIndices(libcpp_vector[MSChromatogram] & picked_chroms, int & chrom_idx, int & point_idx)

getDefaults()

Cython signature: Param getDefaults() Returns the default parameters

getName()

Cython signature: String getName() Returns the name

getParameters()

Cython signature: Param getParameters() Returns the parameters

getSubsections()

Cython signature: libcpp_vector[String] getSubsections()

pickTransitionGroup()

• Cython signature: void pickTransitionGroup(LightMRMTransitionGroupCP transition_group)

• Cython signature: void pickTransitionGroup(MRMTransitionGroupCP transition_group)

remove_overlapping_features()

Cython signature: void remove_overlapping_features(libcpp_vector[MSChromatogram] & picked_chroms, double best_left, double best_right)

setName()

Cython signature: void setName(const String &) Sets the name

setParameters()

Cython signature: void setParameters(Param & param) Sets the parameters