IdXMLFile

class pyopenms.IdXMLFile

Bases: object

Cython implementation of _IdXMLFile

Documentation is available at http://www.openms.de/current_doxygen/html/classOpenMS_1_1IdXMLFile.html

__init__()

Cython signature: void IdXMLFile() Used to load and store idXML files

Methods

__init__	Cython signature: void IdXMLFile() Used to load and store idXML files
load	Cython signature: void load(String filename, libcpp_vector[ProteinIdentification] & protein_ids, libcpp_vector[PeptideIdentification] & peptide_ids) Loads the identifications of an idXML file without identifier
store	Cython signature: void store(String filename, libcpp_vector[ProteinIdentification] & protein_ids, libcpp_vector[PeptideIdentification] & peptide_ids, String document_id)

load()

Cython signature: void load(String filename, libcpp_vector[ProteinIdentification] & protein_ids, libcpp_vector[PeptideIdentification] & peptide_ids) Loads the identifications of an idXML file without identifier

store()

• Cython signature: void store(String filename, libcpp_vector[ProteinIdentification] & protein_ids, libcpp_vector[PeptideIdentification] & peptide_ids, String document_id) Stores the data in an idXML file

• Cython signature: void store(String filename, libcpp_vector[ProteinIdentification] & protein_ids, libcpp_vector[PeptideIdentification] & peptide_ids)