OSWFile

class pyopenms.OSWFile

Bases: object

Cython implementation of _OSWFile

Documentation is available at http://www.openms.de/current_doxygen/html/classOpenMS_1_1OSWFile.html

The reader and writer returns data in a format suitable for PercolatorAdapter. OSW files have a flexible data structure. They contain all peptide query parameters of TraML/PQP files with the detected and quantified features of OpenSwathWorkflow (feature, feature_ms1, feature_ms2 & feature_transition) —– The OSWFile reader extracts the feature information from the OSW file for each level (MS1, MS2 & transition) separately and generates Percolator input files. For each of the three Percolator reports, OSWFile writer adds a table (score_ms1, score_ms2, score_transition) with the respective confidence metrics. These tables can be mapped to the corresponding feature tables, are very similar to PyProphet results and can thus be used interchangeably

__init__()

  • Cython signature: void OSWFile(const libcpp_utf8_string filename)

  • Cython signature: void OSWFile(OSWFile &)

Methods

__init__

  • Cython signature: void OSWFile(const libcpp_utf8_string filename)