ItraqConstants

class pyopenms.ItraqConstants

Bases: object

Cython implementation of _ItraqConstants

Documentation is available at http://www.openms.de/current_doxygen/html/classOpenMS_1_1ItraqConstants.html

Constants for iTRAQ experiments and a ChannelInfo structure to store information about a single channel

__init__()

  • Cython signature: void ItraqConstants()

  • Cython signature: void ItraqConstants(ItraqConstants &)

Methods

__init__

  • Cython signature: void ItraqConstants()

getIsotopeMatrixAsStringList

Cython signature: StringList getIsotopeMatrixAsStringList(int itraq_type, libcpp_vector[MatrixDouble] & isotope_corrections)

translateIsotopeMatrix

Cython signature: MatrixDouble translateIsotopeMatrix(int & itraq_type, libcpp_vector[MatrixDouble] & isotope_corrections)

updateIsotopeMatrixFromStringList

Cython signature: void updateIsotopeMatrixFromStringList(int itraq_type, StringList & channels, libcpp_vector[MatrixDouble] & isotope_corrections)
getIsotopeMatrixAsStringList()

Cython signature: StringList getIsotopeMatrixAsStringList(int itraq_type, libcpp_vector[MatrixDouble] & isotope_corrections)

Each line is converted into a string of the format channel:-2Da/-1Da/+1Da/+2Da ; e.g. ‘114:0/0.3/4/0’ Useful for creating parameters or debug output —– :param itraq_type: Which matrix to stringify. Should be of values from enum ITRAQ_TYPES :param isotope_corrections: Vector of the two matrices (4plex, 8plex)

translateIsotopeMatrix()

Cython signature: MatrixDouble translateIsotopeMatrix(int & itraq_type, libcpp_vector[MatrixDouble] & isotope_corrections)

updateIsotopeMatrixFromStringList()

Cython signature: void updateIsotopeMatrixFromStringList(int itraq_type, StringList & channels, libcpp_vector[MatrixDouble] & isotope_corrections)

Each string of format channel:-2Da/-1Da/+1Da/+2Da ; e.g. ‘114:0/0.3/4/0’ is parsed and the corresponding channel(row) in the matrix is updated Not all channels need to be present, missing channels will be left untouched Useful to update the matrix with user isotope correction values —– :param itraq_type: Which matrix to stringify. Should be of values from enum ITRAQ_TYPES :param channels: New channel isotope values as strings :param isotope_corrections: Vector of the two matrices (4plex, 8plex)