PeptideHit

class pyopenms.PeptideHit

Bases: object

Cython implementation of _PeptideHit

Documentation is available at http://www.openms.de/current_doxygen/html/classOpenMS_1_1PeptideHit.html: – Inherits from [‘MetaInfoInterface’]

__init__()

Cython signature: void PeptideHit()
Cython signature: void PeptideHit(double score, unsigned int rank, int charge, AASequence sequence)
Cython signature: void PeptideHit(PeptideHit &)

Methods

`__init__`	Cython signature: void PeptideHit()
`addAnalysisResults`	Cython signature: void addAnalysisResults(PeptideHit_AnalysisResult aresult) Add information on (search engine) sub scores associated with this PSM
`addPeptideEvidence`	Cython signature: void addPeptideEvidence(PeptideEvidence) Adds information on a peptide that is (potentially) identified by this PSM
`clearMetaInfo`	Cython signature: void clearMetaInfo() Removes all meta values
`extractProteinAccessionsSet`	Cython signature: libcpp_set[String] extractProteinAccessionsSet() Extracts the set of non-empty protein accessions from peptide evidences
`getAnalysisResults`	Cython signature: libcpp_vector[PeptideHit_AnalysisResult] getAnalysisResults() Returns information on (search engine) sub scores associated with this PSM
`getCharge`	Cython signature: int getCharge() Returns the charge of the peptide
`getKeys`	Cython signature: void getKeys(libcpp_vector[String] & keys) Fills the given vector with a list of all keys for which a value is set
`getMetaValue`	Cython signature: DataValue getMetaValue(String) Returns the value corresponding to a string, or
`getPeakAnnotations`	Cython signature: libcpp_vector[PeptideHit_PeakAnnotation] getPeakAnnotations() Returns the fragment annotations
`getPeptideEvidences`	Cython signature: libcpp_vector[PeptideEvidence] getPeptideEvidences() Returns information on peptides (potentially) identified by this PSM
`getRank`	Cython signature: unsigned int getRank() Returns the PSM rank
`getScore`	Cython signature: float getScore() Returns the PSM score
`getSequence`	Cython signature: AASequence getSequence() Returns the peptide sequence without trailing or following spaces
`isMetaEmpty`	Cython signature: bool isMetaEmpty() Returns if the MetaInfo is empty
`metaRegistry`	Cython signature: MetaInfoRegistry metaRegistry() Returns a reference to the MetaInfoRegistry
`metaValueExists`	Cython signature: bool metaValueExists(String) Returns whether an entry with the given name exists
`removeMetaValue`	Cython signature: void removeMetaValue(String) Removes the DataValue corresponding to name if it exists
`setAnalysisResults`	Cython signature: void setAnalysisResults(libcpp_vector[PeptideHit_AnalysisResult] aresult) Sets information on (search engine) sub scores associated with this PSM
`setCharge`	Cython signature: void setCharge(int) Sets the charge of the peptide
`setMetaValue`	Cython signature: void setMetaValue(String, DataValue) Sets the DataValue corresponding to a name
`setPeakAnnotations`	Cython signature: void setPeakAnnotations(libcpp_vector[PeptideHit_PeakAnnotation]) Sets the fragment annotations
`setPeptideEvidences`	Cython signature: void setPeptideEvidences(libcpp_vector[PeptideEvidence]) Sets information on peptides (potentially) identified by this PSM
`setRank`	Cython signature: void setRank(unsigned int) Sets the PSM rank
`setScore`	Cython signature: void setScore(double) Sets the PSM score
`setSequence`	Cython signature: void setSequence(AASequence) Sets the peptide sequence

addAnalysisResults(): Cython signature: void addAnalysisResults(PeptideHit_AnalysisResult aresult) Add information on (search engine) sub scores associated with this PSM

addPeptideEvidence(): Cython signature: void addPeptideEvidence(PeptideEvidence) Adds information on a peptide that is (potentially) identified by this PSM

clearMetaInfo(): Cython signature: void clearMetaInfo() Removes all meta values

extractProteinAccessionsSet(): Cython signature: libcpp_set[String] extractProteinAccessionsSet() Extracts the set of non-empty protein accessions from peptide evidences

getAnalysisResults(): Cython signature: libcpp_vector[PeptideHit_AnalysisResult] getAnalysisResults() Returns information on (search engine) sub scores associated with this PSM

getCharge(): Cython signature: int getCharge() Returns the charge of the peptide

getKeys(): Cython signature: void getKeys(libcpp_vector[String] & keys) Fills the given vector with a list of all keys for which a value is set

getMetaValue(): Cython signature: DataValue getMetaValue(String) Returns the value corresponding to a string, or

getPeakAnnotations(): Cython signature: libcpp_vector[PeptideHit_PeakAnnotation] getPeakAnnotations() Returns the fragment annotations

getPeptideEvidences(): Cython signature: libcpp_vector[PeptideEvidence] getPeptideEvidences() Returns information on peptides (potentially) identified by this PSM

getRank(): Cython signature: unsigned int getRank() Returns the PSM rank

getScore(): Cython signature: float getScore() Returns the PSM score

getSequence(): Cython signature: AASequence getSequence() Returns the peptide sequence without trailing or following spaces

isMetaEmpty(): Cython signature: bool isMetaEmpty() Returns if the MetaInfo is empty

metaRegistry(): Cython signature: MetaInfoRegistry metaRegistry() Returns a reference to the MetaInfoRegistry

metaValueExists(): Cython signature: bool metaValueExists(String) Returns whether an entry with the given name exists

removeMetaValue(): Cython signature: void removeMetaValue(String) Removes the DataValue corresponding to name if it exists

setAnalysisResults(): Cython signature: void setAnalysisResults(libcpp_vector[PeptideHit_AnalysisResult] aresult) Sets information on (search engine) sub scores associated with this PSM

setCharge(): Cython signature: void setCharge(int) Sets the charge of the peptide

setMetaValue(): Cython signature: void setMetaValue(String, DataValue) Sets the DataValue corresponding to a name

setPeakAnnotations(): Cython signature: void setPeakAnnotations(libcpp_vector[PeptideHit_PeakAnnotation]) Sets the fragment annotations

setPeptideEvidences(): Cython signature: void setPeptideEvidences(libcpp_vector[PeptideEvidence]) Sets information on peptides (potentially) identified by this PSM

setRank(): Cython signature: void setRank(unsigned int) Sets the PSM rank

setScore(): Cython signature: void setScore(double) Sets the PSM score

setSequence(): Cython signature: void setSequence(AASequence) Sets the peptide sequence