OpenSwathScoring

class pyopenms.OpenSwathScoring

Bases: object

Cython implementation of _OpenSwathScoring

Documentation is available at http://www.openms.de/current_doxygen/html/classOpenMS_1_1OpenSwathScoring.html

__init__()

• Cython signature: void OpenSwathScoring()

• Cython signature: void OpenSwathScoring(OpenSwathScoring &)

Methods

__init__	Cython signature: void OpenSwathScoring()
getNormalized_library_intensities_	Cython signature: void getNormalized_library_intensities_(libcpp_vector[LightTransition] transitions, libcpp_vector[double] normalized_library_intensity)
initialize	Cython signature: void initialize(double rt_normalization_factor, int add_up_spectra, double spacing_for_spectra_resampling, double drift_extra, OpenSwath_Scores_Usage su, libcpp_string spectrum_addition_method)

getNormalized_library_intensities_()

Cython signature: void getNormalized_library_intensities_(libcpp_vector[LightTransition] transitions, libcpp_vector[double] normalized_library_intensity)

initialize()

Cython signature: void initialize(double rt_normalization_factor, int add_up_spectra, double spacing_for_spectra_resampling, double drift_extra, OpenSwath_Scores_Usage su, libcpp_string spectrum_addition_method)

Parameters

• rt_normalization_factor – Specifies the range of the normalized retention time space

• add_up_spectra – How many spectra to add up (default 1)

• spacing_for_spectra_resampling – Spacing factor for spectra addition

• su – Which scores to actually compute

• spectrum_addition_method – Method to use for spectrum addition (valid: “simple”, “resample”)