PeptideIndexing
- class pyopenms.PeptideIndexing
Bases:
objectCython implementation of _PeptideIndexing
- Documentation is available at http://www.openms.de/current_doxygen/html/classOpenMS_1_1PeptideIndexing.html
– Inherits from [‘DefaultParamHandler’]
- __init__()
Cython signature: void PeptideIndexing()
Cython signature: void PeptideIndexing(PeptideIndexing &)
Methods
Cython signature: void PeptideIndexing()
Cython signature: String getDecoyString()
Cython signature: Param getDefaults() Returns the default parameters
Cython signature: String getName() Returns the name
Cython signature: Param getParameters() Returns the parameters
Cython signature: libcpp_vector[String] getSubsections()
Cython signature: bool isPrefix()
Cython signature: PeptideIndexing_ExitCodes run(libcpp_vector[FASTAEntry] & proteins, libcpp_vector[ProteinIdentification] & prot_ids, libcpp_vector[PeptideIdentification] & pep_ids)
Cython signature: void setName(const String &) Sets the name
Cython signature: void setParameters(Param & param) Sets the parameters
- PeptideIndexing_ExitCodes
alias of
pyopenms.pyopenms_5.__PeptideIndexing_ExitCodes
- getDecoyString()
Cython signature: String getDecoyString()
- getDefaults()
Cython signature: Param getDefaults() Returns the default parameters
- getName()
Cython signature: String getName() Returns the name
- getParameters()
Cython signature: Param getParameters() Returns the parameters
- getSubsections()
Cython signature: libcpp_vector[String] getSubsections()
- isPrefix()
Cython signature: bool isPrefix()
- run()
Cython signature: PeptideIndexing_ExitCodes run(libcpp_vector[FASTAEntry] & proteins, libcpp_vector[ProteinIdentification] & prot_ids, libcpp_vector[PeptideIdentification] & pep_ids)
- setName()
Cython signature: void setName(const String &) Sets the name
- setParameters()
Cython signature: void setParameters(Param & param) Sets the parameters