MapAlignmentAlgorithmPoseClustering

class pyopenms.MapAlignmentAlgorithmPoseClustering

Bases: object

Cython implementation of _MapAlignmentAlgorithmPoseClustering

Documentation is available at http://www.openms.de/current_doxygen/html/classOpenMS_1_1MapAlignmentAlgorithmPoseClustering.html

– Inherits from [‘DefaultParamHandler’, ‘ProgressLogger’]

__init__()

Cython signature: void MapAlignmentAlgorithmPoseClustering()

Methods

__init__	Cython signature: void MapAlignmentAlgorithmPoseClustering()
align	Cython signature: void align(FeatureMap, TransformationDescription &)
endProgress	Cython signature: void endProgress() Ends the progress display
getDefaults	Cython signature: Param getDefaults() Returns the default parameters
getLogType	Cython signature: LogType getLogType() Returns the type of progress log being used
getName	Cython signature: String getName() Returns the name
getParameters	Cython signature: Param getParameters() Returns the parameters
getSubsections	Cython signature: libcpp_vector[String] getSubsections()
nextProgress	Cython signature: void nextProgress() Increment progress by 1 (according to range begin-end)
setLogType	Cython signature: void setLogType(LogType) Sets the progress log that should be used.
setName	Cython signature: void setName(const String &) Sets the name
setParameters	Cython signature: void setParameters(Param & param) Sets the parameters
setProgress	Cython signature: void setProgress(ptrdiff_t value) Sets the current progress
setReference	Cython signature: void setReference(FeatureMap)
startProgress	Cython signature: void startProgress(ptrdiff_t begin, ptrdiff_t end, String label)

align()

• Cython signature: void align(FeatureMap, TransformationDescription &)

• Cython signature: void align(MSExperiment, TransformationDescription &)

endProgress()

Cython signature: void endProgress() Ends the progress display

getDefaults()

Cython signature: Param getDefaults() Returns the default parameters

getLogType()

Cython signature: LogType getLogType() Returns the type of progress log being used

getName()

Cython signature: String getName() Returns the name

getParameters()

Cython signature: Param getParameters() Returns the parameters

getSubsections()

Cython signature: libcpp_vector[String] getSubsections()

nextProgress()

Cython signature: void nextProgress() Increment progress by 1 (according to range begin-end)

setLogType()

Cython signature: void setLogType(LogType) Sets the progress log that should be used. The default type is NONE!

setName()

Cython signature: void setName(const String &) Sets the name

setParameters()

Cython signature: void setParameters(Param & param) Sets the parameters

setProgress()

Cython signature: void setProgress(ptrdiff_t value) Sets the current progress

setReference()

• Cython signature: void setReference(FeatureMap) Sets the reference for the alignment

• Cython signature: void setReference(MSExperiment)

startProgress()

Cython signature: void startProgress(ptrdiff_t begin, ptrdiff_t end, String label)