PeakPickerCWT

class pyopenms.PeakPickerCWT

Bases: object

Cython implementation of _PeakPickerCWT

Documentation is available at http://www.openms.de/current_doxygen/html/classOpenMS_1_1PeakPickerCWT.html: – Inherits from [‘DefaultParamHandler’, ‘ProgressLogger’]

__init__()

Cython signature: void PeakPickerCWT()
Cython signature: void PeakPickerCWT(PeakPickerCWT &)

Methods

`__init__`	Cython signature: void PeakPickerCWT()
`endProgress`	Cython signature: void endProgress() Ends the progress display
`estimatePeakWidth`	Cython signature: double estimatePeakWidth(MSExperiment & input)
`getDefaults`	Cython signature: Param getDefaults() Returns the default parameters
`getLogType`	Cython signature: LogType getLogType() Returns the type of progress log being used
`getName`	Cython signature: String getName() Returns the name
`getParameters`	Cython signature: Param getParameters() Returns the parameters
`getSubsections`	Cython signature: libcpp_vector[String] getSubsections()
`nextProgress`	Cython signature: void nextProgress() Increment progress by 1 (according to range begin-end)
`pick`	Cython signature: void pick(MSSpectrum & input, MSSpectrum & output)
`pickExperiment`	Cython signature: void pickExperiment(MSExperiment & input, MSExperiment & output)
`setLogType`	Cython signature: void setLogType(LogType) Sets the progress log that should be used.
`setName`	Cython signature: void setName(const String &) Sets the name
`setParameters`	Cython signature: void setParameters(Param & param) Sets the parameters
`setProgress`	Cython signature: void setProgress(ptrdiff_t value) Sets the current progress
`startProgress`	Cython signature: void startProgress(ptrdiff_t begin, ptrdiff_t end, String label)

endProgress(): Cython signature: void endProgress() Ends the progress display

estimatePeakWidth()

Cython signature: double estimatePeakWidth(MSExperiment & input)

The spectra with the highest TICs are used to estimate an average peak width that can be used as the peak_width parameter for picking the complete data set. Typically, the number of peaks increases with decreasing peak width until a plateau is reached. The beginning of this plateau is our estimate for the peak width. This estimate is averaged over several spectra

getDefaults(): Cython signature: Param getDefaults() Returns the default parameters

getLogType(): Cython signature: LogType getLogType() Returns the type of progress log being used

getName(): Cython signature: String getName() Returns the name

getParameters(): Cython signature: Param getParameters() Returns the parameters

getSubsections(): Cython signature: libcpp_vector[String] getSubsections()

nextProgress(): Cython signature: void nextProgress() Increment progress by 1 (according to range begin-end)

pick()

Cython signature: void pick(MSSpectrum & input, MSSpectrum & output)

Picks the peaks in the input spectrum and writes the resulting peaks to the output container

pickExperiment()

Cython signature: void pickExperiment(MSExperiment & input, MSExperiment & output)

Picks the peaks successive in every scan in the spectrum range. The detected peaks are stored in the output MSExperiment

setLogType(): Cython signature: void setLogType(LogType) Sets the progress log that should be used. The default type is NONE!

setName(): Cython signature: void setName(const String &) Sets the name

setParameters(): Cython signature: void setParameters(Param & param) Sets the parameters

setProgress(): Cython signature: void setProgress(ptrdiff_t value) Sets the current progress

startProgress(): Cython signature: void startProgress(ptrdiff_t begin, ptrdiff_t end, String label)