TargetedExperiment

class pyopenms.TargetedExperiment

Bases: object

Cython implementation of _TargetedExperiment

Documentation is available at http://www.openms.de/current_doxygen/html/classOpenMS_1_1TargetedExperiment.html

__init__()

• Cython signature: void TargetedExperiment()

• Cython signature: void TargetedExperiment(TargetedExperiment &)

Methods

__init__	Cython signature: void TargetedExperiment()
addCV	Cython signature: void addCV(CV cv)
addCompound	Cython signature: void addCompound(Compound rhs)
addContact	Cython signature: void addContact(Contact contact)
addExcludeTarget	Cython signature: void addExcludeTarget(IncludeExcludeTarget target)
addIncludeTarget	Cython signature: void addIncludeTarget(IncludeExcludeTarget target)
addInstrument	Cython signature: void addInstrument(TargetedExperiment_Instrument instrument)
addPeptide	Cython signature: void addPeptide(Peptide rhs)
addProtein	Cython signature: void addProtein(Protein protein)
addPublication	Cython signature: void addPublication(Publication publication)
addSoftware	Cython signature: void addSoftware(Software software)
addSourceFile	Cython signature: void addSourceFile(SourceFile source_file)
addTargetCVTerm	Cython signature: void addTargetCVTerm(CVTerm cv_term)
addTransition	Cython signature: void addTransition(ReactionMonitoringTransition transition)
clear	Cython signature: void clear(bool clear_meta_data)
containsInvalidReferences	Cython signature: bool containsInvalidReferences()
getCVs	Cython signature: libcpp_vector[CV] getCVs()
getCompoundByRef	Cython signature: Compound getCompoundByRef(String ref)
getCompounds	Cython signature: libcpp_vector[Compound] getCompounds()
getContacts	Cython signature: libcpp_vector[Contact] getContacts()
getExcludeTargets	Cython signature: libcpp_vector[IncludeExcludeTarget] getExcludeTargets()
getIncludeTargets	Cython signature: libcpp_vector[IncludeExcludeTarget] getIncludeTargets()
getInstruments	Cython signature: libcpp_vector[TargetedExperiment_Instrument] getInstruments()
getPeptideByRef	Cython signature: Peptide getPeptideByRef(String ref)
getPeptides	Cython signature: libcpp_vector[Peptide] getPeptides()
getProteinByRef	Cython signature: Protein getProteinByRef(String ref)
getProteins	Cython signature: libcpp_vector[Protein] getProteins()
getPublications	Cython signature: libcpp_vector[Publication] getPublications()
getSoftware	Cython signature: libcpp_vector[Software] getSoftware()
getSourceFiles	Cython signature: libcpp_vector[SourceFile] getSourceFiles()
getTargetCVTerms	Cython signature: CVTermList getTargetCVTerms()
getTransitions	Cython signature: libcpp_vector[ReactionMonitoringTransition] getTransitions()
hasCompound	Cython signature: bool hasCompound(String ref)
hasPeptide	Cython signature: bool hasPeptide(String ref)
hasProtein	Cython signature: bool hasProtein(String ref)
setCVs	Cython signature: void setCVs(libcpp_vector[CV] cvs)
setCompounds	Cython signature: void setCompounds(libcpp_vector[Compound] rhs)
setContacts	Cython signature: void setContacts(libcpp_vector[Contact] contacts)
setExcludeTargets	Cython signature: void setExcludeTargets(libcpp_vector[IncludeExcludeTarget] targets)
setIncludeTargets	Cython signature: void setIncludeTargets(libcpp_vector[IncludeExcludeTarget] targets)
setInstruments	Cython signature: void setInstruments(libcpp_vector[TargetedExperiment_Instrument] instruments)
setPeptides	Cython signature: void setPeptides(libcpp_vector[Peptide] rhs)
setProteins	Cython signature: void setProteins(libcpp_vector[Protein] proteins)
setPublications	Cython signature: void setPublications(libcpp_vector[Publication] publications)
setSoftware	Cython signature: void setSoftware(libcpp_vector[Software] software)
setSourceFiles	Cython signature: void setSourceFiles(libcpp_vector[SourceFile] source_files)
setTargetCVTerms	Cython signature: void setTargetCVTerms(CVTermList cv_terms)
setTargetMetaValue	Cython signature: void setTargetMetaValue(String name, DataValue value)
setTransitions	Cython signature: void setTransitions(libcpp_vector[ReactionMonitoringTransition] transitions)
sortTransitionsByProductMZ	Cython signature: void sortTransitionsByProductMZ()

addCV()

Cython signature: void addCV(CV cv)

addCompound()

Cython signature: void addCompound(Compound rhs)

addContact()

Cython signature: void addContact(Contact contact)

addExcludeTarget()

Cython signature: void addExcludeTarget(IncludeExcludeTarget target)

addIncludeTarget()

Cython signature: void addIncludeTarget(IncludeExcludeTarget target)

addInstrument()

Cython signature: void addInstrument(TargetedExperiment_Instrument instrument)

addPeptide()

Cython signature: void addPeptide(Peptide rhs)

addProtein()

Cython signature: void addProtein(Protein protein)

addPublication()

Cython signature: void addPublication(Publication publication)

addSoftware()

Cython signature: void addSoftware(Software software)

addSourceFile()

Cython signature: void addSourceFile(SourceFile source_file)

addTargetCVTerm()

Cython signature: void addTargetCVTerm(CVTerm cv_term)

addTransition()

Cython signature: void addTransition(ReactionMonitoringTransition transition)

clear()

Cython signature: void clear(bool clear_meta_data)

containsInvalidReferences()

Cython signature: bool containsInvalidReferences()

getCVs()

Cython signature: libcpp_vector[CV] getCVs()

getCompoundByRef()

Cython signature: Compound getCompoundByRef(String ref)

getCompounds()

Cython signature: libcpp_vector[Compound] getCompounds()

getContacts()

Cython signature: libcpp_vector[Contact] getContacts()

getExcludeTargets()

Cython signature: libcpp_vector[IncludeExcludeTarget] getExcludeTargets()

getIncludeTargets()

Cython signature: libcpp_vector[IncludeExcludeTarget] getIncludeTargets()

getInstruments()

Cython signature: libcpp_vector[TargetedExperiment_Instrument] getInstruments()

getPeptideByRef()

Cython signature: Peptide getPeptideByRef(String ref)

getPeptides()

Cython signature: libcpp_vector[Peptide] getPeptides()

getProteinByRef()

Cython signature: Protein getProteinByRef(String ref)

getProteins()

Cython signature: libcpp_vector[Protein] getProteins()

getPublications()

Cython signature: libcpp_vector[Publication] getPublications()

getSoftware()

Cython signature: libcpp_vector[Software] getSoftware()

getSourceFiles()

Cython signature: libcpp_vector[SourceFile] getSourceFiles()

getTargetCVTerms()

Cython signature: CVTermList getTargetCVTerms()

getTransitions()

Cython signature: libcpp_vector[ReactionMonitoringTransition] getTransitions()

hasCompound()

Cython signature: bool hasCompound(String ref)

hasPeptide()

Cython signature: bool hasPeptide(String ref)

hasProtein()

Cython signature: bool hasProtein(String ref)

setCVs()

Cython signature: void setCVs(libcpp_vector[CV] cvs)

setCompounds()

Cython signature: void setCompounds(libcpp_vector[Compound] rhs)

setContacts()

Cython signature: void setContacts(libcpp_vector[Contact] contacts)

setExcludeTargets()

Cython signature: void setExcludeTargets(libcpp_vector[IncludeExcludeTarget] targets)

setIncludeTargets()

Cython signature: void setIncludeTargets(libcpp_vector[IncludeExcludeTarget] targets)

setInstruments()

Cython signature: void setInstruments(libcpp_vector[TargetedExperiment_Instrument] instruments)

setPeptides()

Cython signature: void setPeptides(libcpp_vector[Peptide] rhs)

setProteins()

Cython signature: void setProteins(libcpp_vector[Protein] proteins)

setPublications()

Cython signature: void setPublications(libcpp_vector[Publication] publications)

setSoftware()

Cython signature: void setSoftware(libcpp_vector[Software] software)

setSourceFiles()

Cython signature: void setSourceFiles(libcpp_vector[SourceFile] source_files)

setTargetCVTerms()

Cython signature: void setTargetCVTerms(CVTermList cv_terms)

setTargetMetaValue()

Cython signature: void setTargetMetaValue(String name, DataValue value)

setTransitions()

Cython signature: void setTransitions(libcpp_vector[ReactionMonitoringTransition] transitions)

sortTransitionsByProductMZ()

Cython signature: void sortTransitionsByProductMZ()