PercolatorOutfile

class pyopenms.PercolatorOutfile

Bases: object

Cython implementation of _PercolatorOutfile

Documentation is available at http://www.openms.de/current_doxygen/html/classOpenMS_1_1PercolatorOutfile.html

For PSM-level output, the file extension should be “.psms”

__init__()

• Cython signature: void PercolatorOutfile()

• Cython signature: void PercolatorOutfile(PercolatorOutfile &)

Methods

__init__	Cython signature: void PercolatorOutfile()
getScoreType	Cython signature: PercolatorOutfile_ScoreType getScoreType(String score_type_name) Returns a score type given its name
load	Cython signature: void load(const String & filename, ProteinIdentification & proteins, libcpp_vector[PeptideIdentification] & peptides, SpectrumMetaDataLookup & lookup, PercolatorOutfile_ScoreType output_score) Loads a Percolator output file

PercolatorOutfile_ScoreType

alias of pyopenms.pyopenms_3.__PercolatorOutfile_ScoreType

getScoreType()

Cython signature: PercolatorOutfile_ScoreType getScoreType(String score_type_name) Returns a score type given its name

load()

Cython signature: void load(const String & filename, ProteinIdentification & proteins, libcpp_vector[PeptideIdentification] & peptides, SpectrumMetaDataLookup & lookup, PercolatorOutfile_ScoreType output_score) Loads a Percolator output file