OpenSwathDataAccessHelper

class pyopenms.OpenSwathDataAccessHelper

Bases: object

Cython implementation of _OpenSwathDataAccessHelper

Documentation is available at http://www.openms.de/current_doxygen/html/classOpenMS_1_1OpenSwathDataAccessHelper.html

__init__()

• Cython signature: void OpenSwathDataAccessHelper()

• Cython signature: void OpenSwathDataAccessHelper(OpenSwathDataAccessHelper &)

Methods

__init__	Cython signature: void OpenSwathDataAccessHelper()
convertPeptideToAASequence	Cython signature: void convertPeptideToAASequence(LightCompound & peptide, AASequence & aa_sequence) Converts from the LightCompound to an OpenMS AASequence (with correct modifications)
convertTargetedCompound	Cython signature: void convertTargetedCompound(Peptide pep, LightCompound & p) Converts from the OpenMS TargetedExperiment Peptide to the LightTargetedExperiment Peptide
convertTargetedExp	Cython signature: void convertTargetedExp(TargetedExperiment & transition_exp_, LightTargetedExperiment & transition_exp) Converts from the OpenMS TargetedExperiment to the OpenMs LightTargetedExperiment
convertToChromatogramPtr
convertToOpenMSChromatogram	Cython signature: void convertToOpenMSChromatogram(shared_ptr[OSChromatogram] cptr, MSChromatogram & chromatogram) Converts a ChromatogramPtr to an OpenMS Chromatogram
convertToOpenMSChromatogramFilter	Cython signature: void convertToOpenMSChromatogramFilter(MSChromatogram & chromatogram, shared_ptr[OSChromatogram] cptr, double rt_min, double rt_max)
convertToOpenMSSpectrum	Cython signature: void convertToOpenMSSpectrum(shared_ptr[OSSpectrum] sptr, MSSpectrum & spectrum) Converts a SpectrumPtr to an OpenMS Spectrum
convertToSpectrumPtr

convertPeptideToAASequence()

Cython signature: void convertPeptideToAASequence(LightCompound & peptide, AASequence & aa_sequence) Converts from the LightCompound to an OpenMS AASequence (with correct modifications)

convertTargetedCompound()

Cython signature: void convertTargetedCompound(Peptide pep, LightCompound & p) Converts from the OpenMS TargetedExperiment Peptide to the LightTargetedExperiment Peptide

convertTargetedExp()

Cython signature: void convertTargetedExp(TargetedExperiment & transition_exp_, LightTargetedExperiment & transition_exp) Converts from the OpenMS TargetedExperiment to the OpenMs LightTargetedExperiment

convertToChromatogramPtr()

convertToOpenMSChromatogram()

Cython signature: void convertToOpenMSChromatogram(shared_ptr[OSChromatogram] cptr, MSChromatogram & chromatogram) Converts a ChromatogramPtr to an OpenMS Chromatogram

convertToOpenMSChromatogramFilter()

Cython signature: void convertToOpenMSChromatogramFilter(MSChromatogram & chromatogram, shared_ptr[OSChromatogram] cptr, double rt_min, double rt_max)

convertToOpenMSSpectrum()

Cython signature: void convertToOpenMSSpectrum(shared_ptr[OSSpectrum] sptr, MSSpectrum & spectrum) Converts a SpectrumPtr to an OpenMS Spectrum

convertToSpectrumPtr()