XTandemInfile

class pyopenms.XTandemInfile

Bases: object

Cython implementation of _XTandemInfile

Original C++ documentation is available here

__init__(self) → None

Methods

__init__(self)
getCleavageSite(self)
getDefaultParametersFilename(self)
getFragmentMassErrorUnit(self)
getFragmentMassTolerance(self)
getInputFilename(self)
getMaxPrecursorCharge(self)
getMaxValidEValue(self)
getModifications(self)
getNumberOfMissedCleavages(self)
getNumberOfThreads(self)
getOutputFilename(self)
getOutputResults(self)
getPrecursorErrorType(self)
getPrecursorMassErrorUnit(self)
getPrecursorMassToleranceMinus(self)
getPrecursorMassTolerancePlus(self)
getTaxon(self)
getTaxonomyFilename(self)
setAllowIsotopeError(self, allow_isotope_error)
setCleavageSite(self, cleavage_site)
setDefaultParametersFilename(self, filename)
setFragmentMassErrorUnit(self, unit)
setFragmentMassTolerance(self, tolerance)
setInputFilename(self, input_file)
setMaxPrecursorCharge(self, max_charge)
setMaxValidEValue(self, value)
setModifications(self, mods)
setNumberOfMissedCleavages(self, ...)
setNumberOfThreads(self, threads)
setOutputFilename(self, output)
setOutputResults(self, result)
setPrecursorErrorType(self, mono_isotopic)
setPrecursorMassErrorUnit(self, unit)
setPrecursorMassToleranceMinus(self, tol)
setPrecursorMassTolerancePlus(self, tol)
setSemiCleavage(self, semi_cleavage)
setTaxon(self, taxon)
setTaxonomyFilename(self, filename)
write(self, filename, ...)

ErrorUnit

alias of __ErrorUnit

MassType

alias of __MassType

getCleavageSite(self) → bytes | str | String

getDefaultParametersFilename(self) → bytes | str | String

getFragmentMassErrorUnit(self) → int

getFragmentMassTolerance(self) → float

getInputFilename(self) → bytes | str | String

getMaxPrecursorCharge(self) → int

getMaxValidEValue(self) → float

getModifications(self) → ModificationDefinitionsSet

getNumberOfMissedCleavages(self) → int

getNumberOfThreads(self) → int

getOutputFilename(self) → bytes | str | String

getOutputResults(self) → bytes | str | String

getPrecursorErrorType(self) → int

getPrecursorMassErrorUnit(self) → int

getPrecursorMassToleranceMinus(self) → float

getPrecursorMassTolerancePlus(self) → float

getTaxon(self) → bytes | str | String

getTaxonomyFilename(self) → bytes | str | String

setAllowIsotopeError(self, allow_isotope_error: bool) → None

setCleavageSite(self, cleavage_site: bytes | str | String) → None

setDefaultParametersFilename(self, filename: bytes | str | String) → None

setFragmentMassErrorUnit(self, unit: int) → None

setFragmentMassTolerance(self, tolerance: float) → None

setInputFilename(self, input_file: bytes | str | String) → None

setMaxPrecursorCharge(self, max_charge: int) → None

setMaxValidEValue(self, value: float) → None

setModifications(self, mods: ModificationDefinitionsSet) → None

setNumberOfMissedCleavages(self, missed_cleavages: int) → None

setNumberOfThreads(self, threads: int) → None

setOutputFilename(self, output: bytes | str | String) → None

setOutputResults(self, result: bytes | str | String) → None

setPrecursorErrorType(self, mono_isotopic: int) → None

setPrecursorMassErrorUnit(self, unit: int) → None

setPrecursorMassToleranceMinus(self, tol: float) → None

setPrecursorMassTolerancePlus(self, tol: float) → None

setSemiCleavage(self, semi_cleavage: bool) → None

setTaxon(self, taxon: bytes | str | String) → None

setTaxonomyFilename(self, filename: bytes | str | String) → None

write(self, filename: bytes | str | String, ignore_member_parameters: bool, force_default_mods: bool) → None