TargetedSpectraExtractor

class pyopenms.TargetedSpectraExtractor

Bases: object

Cython implementation of _TargetedSpectraExtractor

Original C++ documentation is available here

– Inherits from [‘DefaultParamHandler’]

__init__()

Overload:

__init__(self) → None

Overload:

__init__(self, in_0: TargetedSpectraExtractor) → None

Methods

__init__	Overload:
annotateSpectra	Overload:
constructTransitionsList(self, in_0, in_1, in_2)
extractSpectra	Overload:
getDefaultParameters(self, in_0)
getDefaults(self)	Returns the default parameters
getName(self)	Returns the name
getParameters(self)	Returns the parameters
getSubsections(self)
mergeFeatures(self, in_0, in_1)
pickSpectrum(self, in_0, in_1)
scoreSpectra	Overload:
searchSpectrum(self, in_0, in_1, in_2)
selectSpectra	Overload:
setName(self, in_0)	Sets the name
setParameters(self, param)	Sets the parameters
storeSpectraMSP(self, in_0, in_1)

annotateSpectra()

Overload:

annotateSpectra(self, in_0: List[MSSpectrum], in_1: TargetedExperiment, in_2: List[MSSpectrum], in_3: FeatureMap) → None

Overload:

annotateSpectra(self, in_0: List[MSSpectrum], in_1: TargetedExperiment, in_2: List[MSSpectrum]) → None

Overload:

annotateSpectra(self, in_0: List[MSSpectrum], in_1: FeatureMap, in_2: FeatureMap, in_3: List[MSSpectrum]) → None

constructTransitionsList(self, in_0: FeatureMap, in_1: FeatureMap, in_2: TargetedExperiment) → None

extractSpectra()

Overload:

extractSpectra(self, in_0: MSExperiment, in_1: TargetedExperiment, in_2: List[MSSpectrum], in_3: FeatureMap, in_4: bool) → None

Overload:

extractSpectra(self, in_0: MSExperiment, in_1: TargetedExperiment, in_2: List[MSSpectrum]) → None

Overload:

extractSpectra(self, in_0: MSExperiment, in_1: FeatureMap, in_2: List[MSSpectrum]) → None

getDefaultParameters(self, in_0: Param) → None

getDefaults(self) → Param

Returns the default parameters

getName(self) → bytes | str | String

Returns the name

getParameters(self) → Param

Returns the parameters

getSubsections(self) → List[bytes]

mergeFeatures(self, in_0: FeatureMap, in_1: FeatureMap) → None

pickSpectrum(self, in_0: MSSpectrum, in_1: MSSpectrum) → None

scoreSpectra()

Overload:

scoreSpectra(self, in_0: List[MSSpectrum], in_1: List[MSSpectrum], in_2: FeatureMap, in_3: List[MSSpectrum]) → None

Overload:

scoreSpectra(self, in_0: List[MSSpectrum], in_1: List[MSSpectrum], in_2: List[MSSpectrum]) → None

searchSpectrum(self, in_0: FeatureMap, in_1: FeatureMap, in_2: bool) → None

selectSpectra()

Overload:

selectSpectra(self, in_0: List[MSSpectrum], in_1: FeatureMap, in_2: List[MSSpectrum], in_3: FeatureMap) → None

Overload:

selectSpectra(self, in_0: List[MSSpectrum], in_1: List[MSSpectrum]) → None

setName(self, in_0: bytes | str | String) → None

Sets the name

setParameters(self, param: Param) → None

Sets the parameters

storeSpectraMSP(self, in_0: bytes | str | String, in_1: MSExperiment) → None