OPXLSpectrumProcessingAlgorithms

class pyopenms.OPXLSpectrumProcessingAlgorithms

Bases: object

Cython implementation of _OPXLSpectrumProcessingAlgorithms

Original C++ documentation is available here

__init__()

Overload:

__init__(self) → None

Overload:

__init__(self, in_0: OPXLSpectrumProcessingAlgorithms) → None

Methods

__init__	Overload:
getSpectrumAlignmentFastCharge(self, ...)
getSpectrumAlignmentSimple(self, alignment, ...)
mergeAnnotatedSpectra(self, first_spectrum, ...)
preprocessSpectra(self, exp, ...)

getSpectrumAlignmentFastCharge(self, alignment: List[List[int, int]], fragment_mass_tolerance: float, fragment_mass_tolerance_unit_ppm: bool, theo_spectrum: MSSpectrum, exp_spectrum: MSSpectrum, theo_charges: IntegerDataArray, exp_charges: IntegerDataArray, ppm_error_array: FloatDataArray, intensity_cutoff: float) → None

getSpectrumAlignmentSimple(self, alignment: List[List[int, int]], fragment_mass_tolerance: float, fragment_mass_tolerance_unit_ppm: bool, theo_spectrum: List[SimplePeak], exp_spectrum: MSSpectrum, exp_charges: IntegerDataArray) → None

mergeAnnotatedSpectra(self, first_spectrum: MSSpectrum, second_spectrum: MSSpectrum) → MSSpectrum

preprocessSpectra(self, exp: MSExperiment, fragment_mass_tolerance: float, fragment_mass_tolerance_unit_ppm: bool, peptide_min_size: int, min_precursor_charge: int, max_precursor_charge: int, deisotope: bool, labeled: bool) → MSExperiment