ControlledVocabulary

class pyopenms.ControlledVocabulary

Bases: object

Cython implementation of _ControlledVocabulary

Original C++ documentation is available here

__init__()

Overload:

__init__(self) → None

Overload:

__init__(self, in_0: ControlledVocabulary) → None

Methods

__init__	Overload:
exists(self, id)	Returns true if the term is in the CV.
getAllChildTerms(self, terms, parent)	Writes all child terms recursively into terms
getTerm(self, id)	Returns a term specified by ID
getTermByName(self, name, desc)	Returns a term specified by name
hasTermWithName(self, name)	Returns true if a term with the given name is in the CV.
isChildOf(self, child, parent)	Returns True if child is a child of parent
loadFromOBO(self, name, filename)	Loads the CV from an OBO file
name(self)	Returns the CV name (set in the load method)

exists(self, id: bytes | str | String) → bool

Returns true if the term is in the CV. Returns false otherwise.

getAllChildTerms(self, terms: Set[bytes], parent: bytes | str | String) → None

Writes all child terms recursively into terms

getTerm(self, id: bytes | str | String) → CVTerm_ControlledVocabulary

Returns a term specified by ID

getTermByName(self, name: bytes | str | String, desc: bytes | str | String) → CVTerm_ControlledVocabulary

Returns a term specified by name

hasTermWithName(self, name: bytes | str | String) → bool

Returns true if a term with the given name is in the CV. Returns false otherwise

isChildOf(self, child: bytes | str | String, parent: bytes | str | String) → bool

Returns True if child is a child of parent

loadFromOBO(self, name: bytes | str | String, filename: bytes | str | String) → None

Loads the CV from an OBO file

name(self) → bytes | str | String

Returns the CV name (set in the load method)