OpenSwath_Scores#
- class pyopenms.OpenSwath_Scores#
Bases:
objectCython implementation of _OpenSwath_Scores
Original C++ documentation is available here
- __init__(self) None#
Methods
__init__(self)calculate_lda_prescore(self, scores)calculate_swath_lda_prescore(self, scores)get_quick_lda_score(self, library_corr_, ...)Attributes
- bseries_score#
- calculate_lda_prescore(self, scores: OpenSwath_Scores) float#
- calculate_swath_lda_prescore(self, scores: OpenSwath_Scores) float#
- dotprod_score_dia#
- elution_model_fit_score#
- get_quick_lda_score(self, library_corr_: float, library_norm_manhattan_: float, norm_rt_score_: float, xcorr_coelution_score_: float, xcorr_shape_score_: float, log_sn_score_: float) float#
- intensity#
- isotope_correlation#
- isotope_overlap#
- library_corr#
- library_dotprod#
- library_manhattan#
- library_norm_manhattan#
- library_rootmeansquare#
- library_sangle#
- log_sn_score#
- manhatt_score_dia#
- massdev_score#
- mi_score#
- ms1_isotope_correlation#
- ms1_isotope_overlap#
- ms1_mi_combined_score#
- ms1_mi_contrast_score#
- ms1_mi_score#
- ms1_ppm_score#
- ms1_xcorr_coelution_combined_score#
- ms1_xcorr_coelution_contrast_score#
- ms1_xcorr_coelution_score#
- ms1_xcorr_shape_combined_score#
- ms1_xcorr_shape_contrast_score#
- ms1_xcorr_shape_score#
- norm_rt_score#
- normalized_experimental_rt#
- nr_peaks#
- raw_rt_score#
- rt_difference#
- sn_ratio#
- sonar_diff#
- sonar_lag#
- sonar_rsq#
- sonar_shape#
- sonar_sn#
- sonar_trend#
- total_xic#
- weighted_coelution_score#
- weighted_massdev_score#
- weighted_mi_score#
- weighted_xcorr_shape#
- xcorr_coelution_score#
- xcorr_shape_score#
- yseries_score#