ExperimentalDesign#

class pyopenms.ExperimentalDesign#

Bases: object

Cython implementation of _ExperimentalDesign

Original C++ documentation is available here

Representation of an experimental design in OpenMS. Instances can be loaded with the ExperimentalDesignFile class

__init__()#

Overload:

Overload:

Methods

`__init__`	Overload:
`fromConsensusMap`	__static_ExperimentalDesign_fromConsensusMap(c: ConsensusMap ) -> ExperimentalDesign
`fromFeatureMap`	__static_ExperimentalDesign_fromFeatureMap(f: FeatureMap ) -> ExperimentalDesign
`fromIdentifications`	__static_ExperimentalDesign_fromIdentifications(proteins: List[ProteinIdentification] ) -> ExperimentalDesign
`getMSFileSection`(self)
`getNumberOfFractionGroups`(self)	Allows to group fraction ids and source files.
`getNumberOfFractions`(self)	Returns the number of fractions (= highest fraction index)
`getNumberOfLabels`(self)	Returns the number of labels per file
`getNumberOfMSFiles`(self)	Returns the number of MS files (= fractions * fraction_groups)
`getNumberOfSamples`(self)	Returns the number of samples measured (= highest sample index)
`getSample`(self, fraction_group, label)	Returns sample index (depends on fraction_group and label)
`getSampleSection`(self)	Returns the Sample Section of the experimental design file
`isFractionated`(self)	Returns whether at least one fraction_group in this experimental design is fractionated
`sameNrOfMSFilesPerFraction`(self)	Returns if each fraction number is associated with the same number of fraction_group
`setMSFileSection`(self, msfile_section)
`setSampleSection`(self, sample_section)	Sets the Sample Section of the experimental design file

fromConsensusMap()#: __static_ExperimentalDesign_fromConsensusMap(c: ConsensusMap ) -> ExperimentalDesign

fromFeatureMap()#: __static_ExperimentalDesign_fromFeatureMap(f: FeatureMap ) -> ExperimentalDesign

fromIdentifications()#: __static_ExperimentalDesign_fromIdentifications(proteins: List[ProteinIdentification] ) -> ExperimentalDesign

getNumberOfFractionGroups(self) → int#: Allows to group fraction ids and source files. Return the number of fraction_groups

getNumberOfFractions(self) → int#: Returns the number of fractions (= highest fraction index)

getNumberOfMSFiles(self) → int#: Returns the number of MS files (= fractions * fraction_groups)

getNumberOfSamples(self) → int#: Returns the number of samples measured (= highest sample index)

getSample(self, fraction_group: int, label: int) → int#: Returns sample index (depends on fraction_group and label)

getSampleSection(self) → ExperimentalDesign_SampleSection#: Returns the Sample Section of the experimental design file

isFractionated(self) → bool#: Returns whether at least one fraction_group in this experimental design is fractionated

sameNrOfMSFilesPerFraction(self) → bool#: Returns if each fraction number is associated with the same number of fraction_group

setMSFileSection(self, msfile_section: List[ExperimentalDesign_MSFileSectionEntry]) → None#

setSampleSection(self, sample_section: ExperimentalDesign_SampleSection) → None#: Sets the Sample Section of the experimental design file