ProteaseDB#

class pyopenms.ProteaseDB#

Bases: object

Cython implementation of _ProteaseDB

Original C++ documentation is available here

__init__(*args, **kwargs)#

Methods

`__init__`(args, *kwargs)
`getAllCometNames`(self, all_names)	Returns all the enzyme names available for Comet
`getAllMSGFNames`(self, all_names)	Returns all the enzyme names available for MSGFPlus
`getAllNames`(self, all_names)
`getAllOMSSANames`(self, all_names)	Returns all the enzyme names available for OMSSA
`getAllXTandemNames`(self, all_names)	Returns all the enzyme names available for XTandem
`getEnzyme`(self, name)
`getEnzymeByRegEx`(self, cleavage_regex)
`hasEnzyme`(self, name)
`hasRegEx`(self, cleavage_regex)

getAllCometNames(self, all_names: List[bytes]) → None#: Returns all the enzyme names available for Comet

getAllMSGFNames(self, all_names: List[bytes]) → None#: Returns all the enzyme names available for MSGFPlus

getAllNames(self, all_names: List[bytes]) → None#

getAllOMSSANames(self, all_names: List[bytes]) → None#: Returns all the enzyme names available for OMSSA

getAllXTandemNames(self, all_names: List[bytes]) → None#: Returns all the enzyme names available for XTandem

getEnzyme(self, name: bytes | str | String) → DigestionEnzymeProtein#

getEnzymeByRegEx(self, cleavage_regex: bytes | str | String) → DigestionEnzymeProtein#

hasEnzyme(self, name: bytes | str | String) → bool#

hasRegEx(self, cleavage_regex: bytes | str | String) → bool#