InclusionExclusionList

class pyopenms.InclusionExclusionList

Bases: object

Cython implementation of _InclusionExclusionList

Original C++ documentation is available here

– Inherits from [‘DefaultParamHandler’]

__init__()

Overload:

__init__(self) → None

Provides functionality for writing inclusion or exclusion lists

Overload:

__init__(self, in_0: InclusionExclusionList) → None

Methods

__init__	Overload:
getDefaults(self)	Returns the default parameters
getName(self)	Returns the name
getParameters(self)	Returns the parameters
getSubsections(self)
setName(self, in_0)	Sets the name
setParameters(self, param)	Sets the parameters
writeTargets	Overload:

getDefaults(self) → Param

Returns the default parameters

getName(self) → bytes | str | String

Returns the name

getParameters(self) → Param

Returns the parameters

getSubsections(self) → List[bytes]

setName(self, in_0: bytes | str | String) → None

Sets the name

setParameters(self, param: Param) → None

Sets the parameters

writeTargets()

Overload:

writeTargets(self, fasta_entries: List[FASTAEntry], out_path: bytes | str | String, charges: List[int], rt_model_path: bytes | str | String) → None

Writes inclusion or exclusion list of tryptic peptides of the given proteins (tab-delimited)

Overload:

writeTargets(self, map_: FeatureMap, out_path: bytes | str | String) → None

Writes inclusion or exclusion list of given feature map

Overload:

writeTargets(self, pep_ids: List[PeptideIdentification], out_path: bytes | str | String, charges: List[int]) → None

Writes inclusion or exclusion list of given peptide ids (tab-delimited)