TargetedExperiment#

class pyopenms.TargetedExperiment#

Bases: object

Cython implementation of _TargetedExperiment

Original C++ documentation is available here

__init__()#

Overload:

__init__(self) → None

Overload:

__init__(self, in_0: TargetedExperiment) → None

Methods

`__init__`	Overload:
`addCV`(self, cv)
`addCompound`(self, rhs)
`addContact`(self, contact)
`addExcludeTarget`(self, target)
`addIncludeTarget`(self, target)
`addInstrument`(self, instrument)
`addPeptide`(self, rhs)
`addProtein`(self, protein)
`addPublication`(self, publication)
`addSoftware`(self, software)
`addSourceFile`(self, source_file)
`addTargetCVTerm`(self, cv_term)
`addTransition`(self, transition)
`clear`(self, clear_meta_data)
`containsInvalidReferences`(self)
`getCVs`(self)
`getCompoundByRef`(self, ref)
`getCompounds`(self)
`getContacts`(self)
`getExcludeTargets`(self)
`getIncludeTargets`(self)
`getInstruments`(self)
`getPeptideByRef`(self, ref)
`getPeptides`(self)
`getProteinByRef`(self, ref)
`getProteins`(self)
`getPublications`(self)
`getSoftware`(self)
`getSourceFiles`(self)
`getTargetCVTerms`(self)
`getTransitions`(self)
`hasCompound`(self, ref)
`hasPeptide`(self, ref)
`hasProtein`(self, ref)
`setCVs`(self, cvs)
`setCompounds`(self, rhs)
`setContacts`(self, contacts)
`setExcludeTargets`(self, targets)
`setIncludeTargets`(self, targets)
`setInstruments`(self, instruments)
`setPeptides`(self, rhs)
`setProteins`(self, proteins)
`setPublications`(self, publications)
`setSoftware`(self, software)
`setSourceFiles`(self, source_files)
`setTargetCVTerms`(self, cv_terms)
`setTargetMetaValue`(self, name, value)
`setTransitions`(self, transitions)
`sortTransitionsByProductMZ`(self)

addCV(self, cv: CV) → None#

addCompound(self, rhs: Compound) → None#

addContact(self, contact: Contact) → None#

addExcludeTarget(self, target: IncludeExcludeTarget) → None#

addIncludeTarget(self, target: IncludeExcludeTarget) → None#

addInstrument(self, instrument: TargetedExperiment_Instrument) → None#

addPeptide(self, rhs: Peptide) → None#

addProtein(self, protein: Protein) → None#

addPublication(self, publication: Publication) → None#

addSoftware(self, software: Software) → None#

addSourceFile(self, source_file: SourceFile) → None#

addTargetCVTerm(self, cv_term: CVTerm) → None#

addTransition(self, transition: ReactionMonitoringTransition) → None#

clear(self, clear_meta_data: bool) → None#

containsInvalidReferences(self) → bool#

getCVs(self) → List[CV]#

getCompoundByRef(self, ref: bytes | str | String) → Compound#

getCompounds(self) → List[Compound]#

getContacts(self) → List[Contact]#

getExcludeTargets(self) → List[IncludeExcludeTarget]#

getIncludeTargets(self) → List[IncludeExcludeTarget]#

getInstruments(self) → List[TargetedExperiment_Instrument]#

getPeptideByRef(self, ref: bytes | str | String) → Peptide#

getPeptides(self) → List[Peptide]#

getProteinByRef(self, ref: bytes | str | String) → Protein#

getProteins(self) → List[Protein]#

getPublications(self) → List[Publication]#

getSoftware(self) → List[Software]#

getSourceFiles(self) → List[SourceFile]#

getTargetCVTerms(self) → CVTermList#

getTransitions(self) → List[ReactionMonitoringTransition]#

hasCompound(self, ref: bytes | str | String) → bool#

hasPeptide(self, ref: bytes | str | String) → bool#

hasProtein(self, ref: bytes | str | String) → bool#

setCVs(self, cvs: List[CV]) → None#

setCompounds(self, rhs: List[Compound]) → None#

setContacts(self, contacts: List[Contact]) → None#

setExcludeTargets(self, targets: List[IncludeExcludeTarget]) → None#

setIncludeTargets(self, targets: List[IncludeExcludeTarget]) → None#

setInstruments(self, instruments: List[TargetedExperiment_Instrument]) → None#

setPeptides(self, rhs: List[Peptide]) → None#

setProteins(self, proteins: List[Protein]) → None#

setPublications(self, publications: List[Publication]) → None#

setSoftware(self, software: List[Software]) → None#

setSourceFiles(self, source_files: List[SourceFile]) → None#

setTargetCVTerms(self, cv_terms: CVTermList) → None#

setTargetMetaValue(self, name: bytes | str | String, value: int | float | bytes | str | List[int] | List[float] | List[bytes]) → None#

setTransitions(self, transitions: List[ReactionMonitoringTransition]) → None#

sortTransitionsByProductMZ(self) → None#